Planaria EST Database

DrC_01021

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01021
         (442 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46995|SET2_YEAST  SET domain protein 2                         30   3.0  
sp|P36029|YKR4_YEAST  Hypothetical amino-acid permease in ST...    29   4.0  
sp|O08796|EF2K_MOUSE  Elongation factor 2 kinase (eEF-2 kina...    29   4.0  
sp|P52472|UL95_HHV7J  Protein U67                                  29   5.2  
sp|Q9NYT6|ZN226_HUMAN  Zinc finger protein 226                     29   5.2  
sp|Q8D2P9|PGK_WIGBR  Phosphoglycerate kinase                       29   5.2  
sp|Q00078|KPC1_ASPNG  Protein kinase C-like                        28   6.8  
sp|Q9X0G6|PANC_THEMA  Pantoate--beta-alanine ligase (Pantoth...    28   6.8  
sp|Q34048|NU4M_CERCA  NADH-ubiquinone oxidoreductase chain 4...    28   6.8  
sp|Q97CD7|PUR5_THEVO  Phosphoribosylformylglycinamidine cycl...    28   8.8  

>sp|P46995|SET2_YEAST SET domain protein 2
          Length = 733

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
 Frame = +2

Query: 164 NIGSQMELTVYDDK---------GHAVNKSINGGTNIKEILVLEVKRYD-PIHIDTIITI 313
           NI   + +TV  +K         G  + K+ N   NI+ +  LEV+  D P+ +  I+++
Sbjct: 274 NIADALGVTVSMEKKWLKLKKLSGEPIIKNENENINIEFLQSLEVQPIDSPVDVTKIMSV 333

Query: 314 NAEVKQDNKIIGQEICK 364
              ++QDNKII  ++ K
Sbjct: 334 L--LQQDNKIIASKLLK 348

>sp|P36029|YKR4_YEAST Hypothetical amino-acid permease in STE3-GIN10 intergenic region
          Length = 618

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 116 FHWYHQQLKFPVEFDIN--IGSQMELTVYDDKGHAVNKSINGGTNIKE 253
           F W     + P+  DI   I S  E TV++ +   V  ++N GT +KE
Sbjct: 516 FKWGKYNFRLPLADDIKAPIPSDAEETVFELEDSNVEHTLNSGTTVKE 563

>sp|O08796|EF2K_MOUSE Elongation factor 2 kinase (eEF-2 kinase) (eEF-2K)
           (Calcium/calmodulin-dependent eukaryotic elongation
           factor 2 kinase)
          Length = 724

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +2

Query: 44  KHSTVQINREMNTNIQISLPKCEDF----HWYHQQLK 142
           +HS + + R  +T + +S  +C+D+    HWY+  L+
Sbjct: 609 RHSMILVARAFDTGLNLSPDRCQDWSEALHWYNTALE 645

>sp|P52472|UL95_HHV7J Protein U67
          Length = 346

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -2

Query: 435 QIIYFIVYYNY*SKLSNRFANNLNLQISCPIILLSCLTSALIVMIVSIWMGS 280
           QI  F   Y          ANNL++ +  PIIL  C      V I  I  GS
Sbjct: 266 QICLFCALYRQNRLCMEYAANNLSMSVFSPIILKDCTFMQTTVTITQILPGS 317

>sp|Q9NYT6|ZN226_HUMAN Zinc finger protein 226
          Length = 803

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +2

Query: 98  LPKCEDFHWYHQQLKFPVEFDINIGSQMELTVYDDKGHAVNKSINGGTNIKEILVLEVKR 277
           L +C+D    + Q     +F   +G+++ + + +D+ + VNK+   G N        + R
Sbjct: 111 LTRCQDSMINNSQCHKQGDFPYQVGTELSIQISEDENYIVNKA--DGPNNTGNPEFPILR 168

Query: 278 YDPIHIDTIITINAEVKQDNKI-IGQEICKFK 370
                  T +T +  + +D +I I  ++C+ K
Sbjct: 169 TQDSWRKTFLTESQRLNRDQQISIKNKLCQCK 200

>sp|Q8D2P9|PGK_WIGBR Phosphoglycerate kinase
          Length = 394

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
 Frame = +2

Query: 158 DINIGSQMELTVYDDKGHAVNKSINGGTNIKEILVLEVKRYDPIHIDTIITIN------- 316
           ++ +G  +  T+   KGH + KS++   NI +I     K+   I  D I+T N       
Sbjct: 211 NVLVGGGIANTILFSKGHNIGKSLHDKNNISKIKKFLYKKNIIIPKDFIVTDNINKFSSY 270

Query: 317 -----AEVKQDNKI--IGQEICK 364
                 E+K ++ I  IG++ C+
Sbjct: 271 KEKSIKEIKNEDYIVDIGKKSCE 293

>sp|Q00078|KPC1_ASPNG Protein kinase C-like
          Length = 1096

 Score = 28.5 bits (62), Expect = 6.8
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 134 QLKFPVEFDINIGSQMELTVYDDKGHAVNKSINGGTNIK-----EILVLEVKRYDPIHID 298
           + K  VE     G +  + +Y D+G   +++   G  I+     ++L   +KRY+ +H+D
Sbjct: 166 EFKLSVEKQYKAGIEKMVRLYQDEGDRKSRADAEGRRIESNQKIQLLKQALKRYEDLHVD 225

>sp|Q9X0G6|PANC_THEMA Pantoate--beta-alanine ligase (Pantothenate synthetase)
           (Pantoate-activating enzyme)
          Length = 280

 Score = 28.5 bits (62), Expect = 6.8
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
 Frame = +2

Query: 176 QMELTVYDDKGHAVNKSING---GTNIKEILVLEVKRYDPIHIDTIITINAEV-----KQ 331
           Q  L++Y     A N  +NG      IKE ++  + R+D + ID +  ++ E      K 
Sbjct: 197 QQALSLYQSLKIAENLYLNGERDAEKIKEEMIKHLSRFDKVKIDYVEIVDEETLEPVEKI 256

Query: 332 DNKII 346
           D K+I
Sbjct: 257 DRKVI 261

>sp|Q34048|NU4M_CERCA NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
           4)
          Length = 446

 Score = 28.5 bits (62), Expect = 6.8
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -1

Query: 232 INRFIYCMTFVVINS*FHLRANINVEFNRKFQLLVVPMKIFAFW*TNLYICVHFSI 65
           ++  ++ +TFV+I   F L   +N+ +   F +L   + + +FW  +L I    S+
Sbjct: 24  VHNLLFVITFVLILMNFCLNYFVNISYFMGFDVLSYGLILLSFWICSLMIVASESV 79

>sp|Q97CD7|PUR5_THEVO Phosphoribosylformylglycinamidine cyclo-ligase (AIRS)
           (Phosphoribosyl-aminoimidazole synthetase) (AIR
           synthase)
          Length = 338

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 131 QQLKFPVEFDINIGSQMELTVYDDKGHAVNKSINGGTNIKEILVLEVKRYDPIHIDTI 304
           +QLKF  E   NIG     T   D G+      N G   K ++  +  +YD + ID +
Sbjct: 23  RQLKFHREDFKNIGYIGGFTSLIDMGNFALSFNNDGVGTKTMIAEQANKYDTLGIDCV 80

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,204,347
Number of Sequences: 369166
Number of extensions: 890660
Number of successful extensions: 1965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01021

  1. Dr_sW_025_L12
  2. Dr_sW_013_H03