Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H03
(393 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NYT6|ZN226_HUMAN Zinc finger protein 226 31 0.78
sp|P47204|FTSZ_PSEAE Cell division protein ftsZ 30 1.7
sp|P46995|SET2_YEAST SET domain protein 2 30 1.7
sp|P52472|UL95_HHV7J Protein U67 29 3.9
sp|P36029|YKR4_YEAST Hypothetical amino-acid permease in ST... 29 3.9
sp|O99828|CYB_RHISA Cytochrome b 29 3.9
sp|Q8D2P9|PGK_WIGBR Phosphoglycerate kinase 29 3.9
sp|P10963|PPCK_YEAST Phosphoenolpyruvate carboxykinase [ATP] 28 5.1
sp|Q8NYF3|ESSC_STAAW Protein essC >gi|68565476|sp|Q6GCI5|ES... 28 5.1
sp|Q6GK24|ESSC_STAAR Protein essC 28 5.1
>sp|Q9NYT6|ZN226_HUMAN Zinc finger protein 226
Length = 803
Score = 31.2 bits (69), Expect = 0.78
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 49 LPKCEDFHWYHQQLKFPVEFDINIGSQLELTVYDDKGHVVNKSINGGTNIKEILVLEVKR 228
L +C+D + Q +F +G++L + + +D+ ++VNK+ G N + R
Sbjct: 111 LTRCQDSMINNSQCHKQGDFPYQVGTELSIQISEDENYIVNKA--DGPNNTGNPEFPILR 168
Query: 229 YDPIHIDTIITINAEVKQDNKI-IGQEICKFK 321
T +T + + +D +I I ++C+ K
Sbjct: 169 TQDSWRKTFLTESQRLNRDQQISIKNKLCQCK 200
>sp|P47204|FTSZ_PSEAE Cell division protein ftsZ
Length = 394
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 109 DINIGSQLELTVYDDKGHVVNKSINGGTNIKEILVLEVKRYDPIHIDTIIT-INAEVKQD 285
+I G L L Y D G+++ + + +K V++ D +H+ + T + A +++
Sbjct: 264 NITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVATGLGARLEKP 323
Query: 286 NKIIGQEI 309
K++ +
Sbjct: 324 VKVVDNTV 331
>sp|P46995|SET2_YEAST SET domain protein 2
Length = 733
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Frame = +1
Query: 115 NIGSQLELTVYDDK---------GHVVNKSINGGTNIKEILVLEVKRYD-PIHIDTIITI 264
NI L +TV +K G + K+ N NI+ + LEV+ D P+ + I+++
Sbjct: 274 NIADALGVTVSMEKKWLKLKKLSGEPIIKNENENINIEFLQSLEVQPIDSPVDVTKIMSV 333
Query: 265 NAEVKQDNKIIGQEICK 315
++QDNKII ++ K
Sbjct: 334 L--LQQDNKIIASKLLK 348
>sp|P52472|UL95_HHV7J Protein U67
Length = 346
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -2
Query: 386 QIIYFIVYYNY*SKLSNRFANNLNLQISCPIILLSCLTSALIVMIVSIWMGS 231
QI F Y ANNL++ + PIIL C V I I GS
Sbjct: 266 QICLFCALYRQNRLCMEYAANNLSMSVFSPIILKDCTFMQTTVTITQILPGS 317
>sp|P36029|YKR4_YEAST Hypothetical amino-acid permease in STE3-GIN10 intergenic region
Length = 618
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 67 FHWYHQQLKFPVEFDIN--IGSQLELTVYDDKGHVVNKSINGGTNIKE 204
F W + P+ DI I S E TV++ + V ++N GT +KE
Sbjct: 516 FKWGKYNFRLPLADDIKAPIPSDAEETVFELEDSNVEHTLNSGTTVKE 563
>sp|O99828|CYB_RHISA Cytochrome b
Length = 358
Score = 28.9 bits (63), Expect = 3.9
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -1
Query: 363 LQLLIKIIESFC**FKFTNFLSN-----NFVILLDFSVNCNDCINMDGVISLYFQY*NFF 199
L + I II SFC F N +S+ +F ++ VNC + G + + + F
Sbjct: 284 LVMSIIIILSFC--FTMNNKMSSFYFNISFKLMFWILVNCFFMLTYLGAMPIEYP----F 337
Query: 198 DICSSINRFIYYMTFVVI 145
D+ S I IY++ F +I
Sbjct: 338 DLMSKITTIIYFLMFFMI 355
>sp|Q8D2P9|PGK_WIGBR Phosphoglycerate kinase
Length = 394
Score = 28.9 bits (63), Expect = 3.9
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Frame = +1
Query: 109 DINIGSQLELTVYDDKGHVVNKSINGGTNIKEILVLEVKRYDPIHIDTIITIN------- 267
++ +G + T+ KGH + KS++ NI +I K+ I D I+T N
Sbjct: 211 NVLVGGGIANTILFSKGHNIGKSLHDKNNISKIKKFLYKKNIIIPKDFIVTDNINKFSSY 270
Query: 268 -----AEVKQDNKI--IGQEICK 315
E+K ++ I IG++ C+
Sbjct: 271 KEKSIKEIKNEDYIVDIGKKSCE 293
>sp|P10963|PPCK_YEAST Phosphoenolpyruvate carboxykinase [ATP]
Length = 549
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 91 KFPVEFD-INIGSQLELTVYDDKGHVVN 171
K P FD I GS LE +YD+K HVV+
Sbjct: 298 KEPEIFDAIKFGSVLENVIYDEKSHVVD 325
>sp|Q8NYF3|ESSC_STAAW Protein essC
sp|Q6GCI5|ESSC_STAAS Protein essC
Length = 1479
Score = 28.5 bits (62), Expect = 5.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 160 HVVNKSINGGTN---IKEILVLEVKRYDPIHIDTIITINAEVKQDNKIIGQEICKFKLLA 330
HV+ + +N + I I V +V P H+DTII I + + + +E+ + K
Sbjct: 522 HVILEYVNQDLSEYGISLIFVEDVIESLPEHVDTIIDIKSRTEGELITKEKELVQLKFTP 581
Query: 331 KRFDNFD 351
+ DN D
Sbjct: 582 ENIDNVD 588
>sp|Q6GK24|ESSC_STAAR Protein essC
Length = 1482
Score = 28.5 bits (62), Expect = 5.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 160 HVVNKSINGGTN---IKEILVLEVKRYDPIHIDTIITINAEVKQDNKIIGQEICKFKLLA 330
HV+ + +N + I I V +V P H+DTII I + + + +E+ + K
Sbjct: 522 HVILEYVNQDLSEYGISLIFVEDVIESLPEHVDTIIDIKSRTEGELITKEKELVQLKFTP 581
Query: 331 KRFDNFD 351
+ DN D
Sbjct: 582 ENIDNVD 588
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,615,929
Number of Sequences: 369166
Number of extensions: 762376
Number of successful extensions: 1738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)