Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_L12
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36029|YKR4_YEAST Hypothetical amino-acid permease in ST... 29 3.0
sp|Q34048|NU4M_CERCA NADH-ubiquinone oxidoreductase chain 4... 28 5.1
>sp|P36029|YKR4_YEAST Hypothetical amino-acid permease in STE3-GIN10 intergenic region
Length = 618
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 116 FHWYHQQLKFPVEFDIN--IGSQMELTVYDDKGHAVNKSINGGTNIKE 253
F W + P+ DI I S E TV++ + V ++N GT +KE
Sbjct: 516 FKWGKYNFRLPLADDIKAPIPSDAEETVFELEDSNVEHTLNSGTTVKE 563
>sp|Q34048|NU4M_CERCA NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 446
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = -2
Query: 232 INRFIYCMTFVVINS*FHLRANINVEFNRKFQLLVVPMKIFAFW*TNLYICVHFSI 65
++ ++ +TFV+I F L +N+ + F +L + + +FW +L I S+
Sbjct: 24 VHNLLFVITFVLILMNFCLNYFVNISYFMGFDVLSYGLILLSFWICSLMIVASESV 79
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,333,059
Number of Sequences: 369166
Number of extensions: 637196
Number of successful extensions: 1258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)