Planaria EST Database

DrC_01011

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01011
         (1241 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92377|MDM12_SCHPO  Mitochondrial inheritance component m...    31   6.5  
sp|Q37380|ATPAM_ACACA  ATP synthase alpha chain, mitochondrial     31   8.5  

>sp|Q92377|MDM12_SCHPO Mitochondrial inheritance component mdm12
          Length = 273

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 132 WDFLRGPHWVKVIQNKIQCKLKKMHLPQFIDQLTVVDIHFGKEIPLI 272
           W  L      KV+ + ++ ++  + LP +I  L VVD HFGK  P I
Sbjct: 7   WSKLDSELEAKVL-HLLEGQVSNLSLPSYIKHLKVVDFHFGKVSPQI 52

>sp|Q37380|ATPAM_ACACA ATP synthase alpha chain, mitochondrial
          Length = 522

 Score = 30.8 bits (68), Expect = 8.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 892  VGQKEISISKITELIEKKLTLEFQKVLVLPNMDDIPLPLL 1011
            +GQK  SISK+  L+EK  +LE+  ++     +  PL  L
Sbjct: 208  IGQKRSSISKLVTLLEKTNSLEYSIIVAATASEAAPLQYL 247

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,616,911
Number of Sequences: 369166
Number of extensions: 2529157
Number of successful extensions: 5929
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5926
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14243977500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01011

  1. Dr_sW_025_I07
  2. Dr_sW_020_P22