Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_I07
(772 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q92377|MDM12_SCHPO Mitochondrial inheritance component m... 31 3.3
sp|P47847|SECA_LISMO Preprotein translocase secA subunit 30 9.5
sp|Q927Y3|SECA_LISIN Preprotein translocase secA subunit 30 9.5
sp|O18759|APOA1_TUPGB Apolipoprotein A-I precursor (Apo-AI)... 30 9.5
>sp|Q92377|MDM12_SCHPO Mitochondrial inheritance component mdm12
Length = 273
Score = 31.2 bits (69), Expect = 3.3
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 132 WDFLRGPHWVKVIQNKIQCKLKKMHLPQFIDQLTVVDIHFGKEIPLI 272
W L KV+ + ++ ++ + LP +I L VVD HFGK P I
Sbjct: 7 WSKLDSELEAKVL-HLLEGQVSNLSLPSYIKHLKVVDFHFGKVSPQI 52
>sp|P47847|SECA_LISMO Preprotein translocase secA subunit
Length = 837
Score = 29.6 bits (65), Expect = 9.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 39 LLTSEVMSLDVNYVTCNPEILCVNAFLGRM 128
L + MSLDV+YV + E+L V+ F GR+
Sbjct: 294 LKANYTMSLDVDYVVQDDEVLIVDQFTGRI 323
>sp|Q927Y3|SECA_LISIN Preprotein translocase secA subunit
Length = 837
Score = 29.6 bits (65), Expect = 9.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 39 LLTSEVMSLDVNYVTCNPEILCVNAFLGRM 128
L + MSLDV+YV + E+L V+ F GR+
Sbjct: 294 LKANYTMSLDVDYVVQDDEVLIVDQFTGRI 323
>sp|O18759|APOA1_TUPGB Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
Length = 265
Score = 29.6 bits (65), Expect = 9.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 444 ELNSELNKDDEDVKSRSQSMKSQIYKK 524
EL E+NKD EDV+ ++Q +I KK
Sbjct: 104 ELRREINKDLEDVRQKTQPFLDEIQKK 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,084,097
Number of Sequences: 369166
Number of extensions: 1632219
Number of successful extensions: 3495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)