Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P22
(792 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02362|ICP4_GAHVG Trans-acting transcriptional activator... 31 3.4
sp|Q37380|ATPAM_ACACA ATP synthase alpha chain, mitochondrial 31 4.4
sp|P33891|TIP20_YEAST Protein transport protein TIP20 30 5.8
sp|Q8D1V8|G6PI_WIGBR Glucose-6-phosphate isomerase (GPI) (P... 30 9.8
>sp|Q02362|ICP4_GAHVG Trans-acting transcriptional activator protein ICP4
(Immediate-early protein IE175)
Length = 1415
Score = 31.2 bits (69), Expect = 3.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 515 IQRGMEIVSNTKLMLQVEVHNICGTLALNIPPPPSDRLWFG 393
+QR V+++ + +++CG++ +P PP R WFG
Sbjct: 260 VQRNDIQVTSSSGLADTSPYDLCGSVWWEVPLPPPGRCWFG 300
>sp|Q37380|ATPAM_ACACA ATP synthase alpha chain, mitochondrial
Length = 522
Score = 30.8 bits (68), Expect = 4.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 350 VGQKEISISKITELIEKKLTLEFQKVLVLPNMDDIPLPLL 231
+GQK SISK+ L+EK +LE+ ++ + PL L
Sbjct: 208 IGQKRSSISKLVTLLEKTNSLEYSIIVAATASEAAPLQYL 247
>sp|P33891|TIP20_YEAST Protein transport protein TIP20
Length = 701
Score = 30.4 bits (67), Expect = 5.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 18 INLFRKHRNNFITKDVCELLIYKFRNFFTKSENINQLIQIFSENFLNLNKFEQ 176
IN+ R+ N + D+ + K +N E +N ++ F+E+ L LNKF Q
Sbjct: 564 INVLRRLINKLDSMDIPLAISLKVKN-----ELLNVIVNYFTESILKLNKFNQ 611
>sp|Q8D1V8|G6PI_WIGBR Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
(PGI) (Phosphohexose isomerase) (PHI)
Length = 548
Score = 29.6 bits (65), Expect = 9.8
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 3 KKHKFINLFRKHRNNFITKDVC---ELLIYKFRNFFTKSENINQLIQIFSENFLN 158
KK +LF K +N F + +C +LI +N TK E I +LIQ+ E LN
Sbjct: 23 KKVNIKDLFEKDKNRFSSFSICFDDIILIDYSKNIITK-ETIKKLIQLAKECDLN 76
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,328,956
Number of Sequences: 369166
Number of extensions: 1285225
Number of successful extensions: 3081
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3081
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)