DrC_01002
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01002 (1104 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 62 3e-09 sp|P10383|OTU_DROME Ovarian tumor locus protein 61 5e-09 sp|Q01804|HIN1_HUMAN Putative HIV-1-induced protein HIN-1 49 3e-05 sp|P22856|VL96_IRV1 L96 protein 47 7e-05 sp|O67037|RGYR1_AQUAE Reverse gyrase 1 [Includes: Helicase ... 31 5.5 sp|Q9JJT0|RCL1_MOUSE RNA 3'-terminal phosphate cyclase-like... 31 7.2 sp|Q8U380|MPGS_PYRFU Mannosyl-3-phosphoglycerate synthase (... 31 7.2 sp|Q9Y2P8|RCL1_HUMAN RNA 3'-terminal phosphate cyclase-like... 31 7.2 sp|Q8NX92|PURL_STAAW Phosphoribosylformylglycinamidine synt... 30 9.4 sp|P65901|PURL_STAAN Phosphoribosylformylglycinamidine synt... 30 9.4
>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 Length = 398 Score = 62.0 bits (149), Expect = 3e-09 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Frame = -3 Query: 1063 GWKIIVVGSDGACLFRAVAHQIFGDEEKHMIIREQVINYMKQNREHFSQFISED--FEHY 890 G K+ V DG CLFRA+ Q+ G H+ R++ ++YM + RE F F+ +D FE + Sbjct: 64 GLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPFEKH 123 Query: 889 LIRKLDPHTHGNHVEIQAISELYNRPVEIYHNSLEPINVFHREYNDLPPLRLSYHGGIHY 710 + P T + I A + + V I+ + + E + + L ++Y G HY Sbjct: 124 VASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHY 183 Query: 709 NSI 701 +S+ Sbjct: 184 DSV 186
>sp|P10383|OTU_DROME Ovarian tumor locus protein Length = 853 Score = 61.2 bits (147), Expect = 5e-09 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Frame = -3 Query: 1036 DGACLFRAVAHQIFGDEEKHMIIREQVINYMKQNREHFSQFISEDFEHYLIRKLDPHTHG 857 D + LFR +A Q++ + H IR + + +M R F + I DF+ Y+ P T+G Sbjct: 37 DASSLFRVIAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKEIPGDFDSYMQDMSKPKTYG 96 Query: 856 NHVEIQAISELYNRPVEIYHNSLEPIN-----VFHREYNDLPPLRLSYHGGIHYNSIVD 695 E++A+S LY R V +Y EP N VF+R Y + R+ ++ H++S+ D Sbjct: 97 TMTELRAMSCLYRRNVILY----EPYNMGTSVVFNRRYAE--NFRVFFNNENHFDSVYD 149
>sp|Q01804|HIN1_HUMAN Putative HIV-1-induced protein HIN-1 Length = 145 Score = 48.5 bits (114), Expect = 3e-05 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = -3 Query: 955 INYMKQNREHFSQFISEDFEHYLIRKLDPHTHGNHVEIQAISELYNRPVEIYHN-SLEPI 779 I+Y+++NRE F FI FE YL R +P VEI A+S +Y + IY ++ P Sbjct: 4 IHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPS 63 Query: 778 NVFHREYNDLPPLRLSYHGGIHYNSI 701 V E N + L + G HY+ + Sbjct: 64 QV--TENNFPEKVLLCFSNGNHYDIV 87
>sp|P22856|VL96_IRV1 L96 protein Length = 867 Score = 47.4 bits (111), Expect = 7e-05 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 24/175 (13%) Frame = -3 Query: 1081 LLKEKKGWKIIVVGSDGACLFRAVAHQIFGDEE---KHMIIREQVINYMKQNREHFSQFI 911 +L ++G+K+I V DG CLFRAV + ++ H +R QV+ Y+ ++E ++ Sbjct: 599 ILARRRGYKVIPVKGDGNCLFRAVGKSLRLNQNIKYSHEDLRAQVVTYLTSHKEFLEPYL 658 Query: 910 --------------SEDFEHYLIRKLDPHTHGNHVEIQAISELYNRPVEIYHNSLEPINV 773 +++ E Y+ P T G+ + ++ +SE+ + + V Sbjct: 659 EYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFICLRVLSEILKVKFNLLILNTRNFQV 718 Query: 772 FHREYNDLPPLRLSYHGGIHYNSIVDPQNPTFGEGLGM-------PNYQPRLSEP 629 P + L + HY ++ P + E + + P+ P + P Sbjct: 719 ISNNDTFKPLIPLGFIDDYHYTAL----TPLYAEPIAVLENETPTPSIAPSIRPP 769
>sp|O67037|RGYR1_AQUAE Reverse gyrase 1 [Includes: Helicase ; Topoisomerase ] Length = 1146 Score = 31.2 bits (69), Expect = 5.5 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = -3 Query: 964 EQVINYMKQNREHFSQFISEDFEHYLIRKLDPHTHGNHVEIQAISELYNRPVEIYHNSLE 785 +QV ++K +RE F+SE+F L +D G +Q + ELY + N E Sbjct: 1089 KQVYEFLK-SREKIMPFVSEEFTRKLEELMDKVEEGKEDYLQVLDELYKKV-----NEFE 1142 Query: 784 PINV 773 NV Sbjct: 1143 KANV 1146
>sp|Q9JJT0|RCL1_MOUSE RNA 3'-terminal phosphate cyclase-like protein Length = 373 Score = 30.8 bits (68), Expect = 7.2 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = -3 Query: 904 DFEHYLIRKLDPHTHGNHVEI-QAISELYNRPVEIYHNSLE 785 DFE IR LD T+G+ +EI Q + LY +P +Y S+E Sbjct: 46 DFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVE 86
>sp|Q8U380|MPGS_PYRFU Mannosyl-3-phosphoglycerate synthase (MPG synthase) (MPGS) Length = 394 Score = 30.8 bits (68), Expect = 7.2 Identities = 17/64 (26%), Positives = 27/64 (42%) Frame = -3 Query: 940 QNREHFSQFISEDFEHYLIRKLDPHTHGNHVEIQAISELYNRPVEIYHNSLEPINVFHRE 761 +N E F + E + I L+PH H + + + IYH+ + N+ R Sbjct: 286 ENVEEFKDVFDQGIEIFQIETLNPHFHEDKGQEHVREMILLSLATIYHSKMASKNLKRRI 345 Query: 760 YNDL 749 NDL Sbjct: 346 LNDL 349
>sp|Q9Y2P8|RCL1_HUMAN RNA 3'-terminal phosphate cyclase-like protein Length = 373 Score = 30.8 bits (68), Expect = 7.2 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = -3 Query: 904 DFEHYLIRKLDPHTHGNHVEI-QAISELYNRPVEIYHNSLE 785 DFE IR LD T+G+ +EI Q + LY +P +Y S+E Sbjct: 46 DFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVE 86
>sp|Q8NX92|PURL_STAAW Phosphoribosylformylglycinamidine synthase II (FGAM synthase II) sp|Q6GAE4|PURL_STAAS Phosphoribosylformylglycinamidine synthase II (FGAM synthase II) sp|Q5HH15|PURL_STAAC Phosphoribosylformylglycinamidine synthase II (FGAM synthase II) Length = 729 Score = 30.4 bits (67), Expect = 9.4 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -3 Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221 G+V D +R + + DD ++ +PVE L D+ +LE ++Y Sbjct: 349 GEVTDTNRFVLTYDDEVYADIPVEPL---ADEAPVYILEGEEKDY 390
>sp|P65901|PURL_STAAN Phosphoribosylformylglycinamidine synthase II (FGAM synthase II) sp|P65900|PURL_STAAM Phosphoribosylformylglycinamidine synthase II (FGAM synthase II) Length = 729 Score = 30.4 bits (67), Expect = 9.4 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -3 Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221 G+V D +R + + DD ++ +PVE L D+ +LE ++Y Sbjct: 349 GEVTDTNRFVLTYDDEVYADIPVEPL---ADEAPVYILEGEEKDY 390
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,971,846
Number of Sequences: 369166
Number of extensions: 2633122
Number of successful extensions: 7275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7273
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12154488300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
