Planarian EST Database


Dr_sW_025_F04

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_025_F04
         (667 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NX92|PURL_STAAW  Phosphoribosylformylglycinamidine synt...    30   4.3  
sp|P65901|PURL_STAAN  Phosphoribosylformylglycinamidine synt...    30   4.3  
sp|Q8CPN9|PURL_STAES  Phosphoribosylformylglycinamidine synt...    30   5.7  
sp|Q5HQA1|PURL_STAEQ  Phosphoribosylformylglycinamidine synt...    30   5.7  
sp|Q92359|YDHE_SCHPO  Hypothetical protein C6G9.14 in chromo...    30   7.4  
>sp|Q8NX92|PURL_STAAW Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
 sp|Q6GAE4|PURL_STAAS Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
 sp|Q5HH15|PURL_STAAC Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
          Length = 729

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221
           G+V D +R + + DD ++  +PVE L    D+    +LE   ++Y
Sbjct: 349 GEVTDTNRFVLTYDDEVYADIPVEPL---ADEAPVYILEGEEKDY 390
>sp|P65901|PURL_STAAN Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
 sp|P65900|PURL_STAAM Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
          Length = 729

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221
           G+V D +R + + DD ++  +PVE L    D+    +LE   ++Y
Sbjct: 349 GEVTDTNRFVLTYDDEVYADIPVEPL---ADEAPVYILEGEEKDY 390
>sp|Q8CPN9|PURL_STAES Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
          Length = 729

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221
           G+V D  R + + DD ++  +PV+ L    D+    +LE   +EY
Sbjct: 349 GEVTDTDRFVLTYDDEVYADIPVQPL---ADEAPVYILEGEEKEY 390
>sp|Q5HQA1|PURL_STAEQ Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
          Length = 729

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221
           G+V D  R + + DD ++  +PV+ L    D+    +LE   +EY
Sbjct: 349 GEVTDTDRFVLTYDDEVYADIPVQPL---ADEAPVYILEGEEKEY 390
>sp|Q92359|YDHE_SCHPO Hypothetical protein C6G9.14 in chromosome I
          Length = 681

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +1

Query: 13  FIYKLKTCTQ*KLQFNRMHKLIFF*INSVTERDVSRI----YIYKLIIFAFINY 162
           F+YK++  +  K   N M K IFF   ++ E+ +S +    ++ KL+  +F NY
Sbjct: 561 FLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFANY 614
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,368,742
Number of Sequences: 369166
Number of extensions: 1277220
Number of successful extensions: 2934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2934
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)