Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_F04
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NX92|PURL_STAAW Phosphoribosylformylglycinamidine synt... 30 4.3
sp|P65901|PURL_STAAN Phosphoribosylformylglycinamidine synt... 30 4.3
sp|Q8CPN9|PURL_STAES Phosphoribosylformylglycinamidine synt... 30 5.7
sp|Q5HQA1|PURL_STAEQ Phosphoribosylformylglycinamidine synt... 30 5.7
sp|Q92359|YDHE_SCHPO Hypothetical protein C6G9.14 in chromo... 30 7.4
>sp|Q8NX92|PURL_STAAW Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
sp|Q6GAE4|PURL_STAAS Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
sp|Q5HH15|PURL_STAAC Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
Length = 729
Score = 30.4 bits (67), Expect = 4.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221
G+V D +R + + DD ++ +PVE L D+ +LE ++Y
Sbjct: 349 GEVTDTNRFVLTYDDEVYADIPVEPL---ADEAPVYILEGEEKDY 390
>sp|P65901|PURL_STAAN Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
sp|P65900|PURL_STAAM Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
Length = 729
Score = 30.4 bits (67), Expect = 4.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221
G+V D +R + + DD ++ +PVE L D+ +LE ++Y
Sbjct: 349 GEVTDTNRFVLTYDDEVYADIPVEPL---ADEAPVYILEGEEKDY 390
>sp|Q8CPN9|PURL_STAES Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
Length = 729
Score = 30.0 bits (66), Expect = 5.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221
G+V D R + + DD ++ +PV+ L D+ +LE +EY
Sbjct: 349 GEVTDTDRFVLTYDDEVYADIPVQPL---ADEAPVYILEGEEKEY 390
>sp|Q5HQA1|PURL_STAEQ Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
Length = 729
Score = 30.0 bits (66), Expect = 5.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 355 GDVKDHSRVIKSVDDSIFRHMPVEMLDMDEDDVLAMVLENSRQEY 221
G+V D R + + DD ++ +PV+ L D+ +LE +EY
Sbjct: 349 GEVTDTDRFVLTYDDEVYADIPVQPL---ADEAPVYILEGEEKEY 390
>sp|Q92359|YDHE_SCHPO Hypothetical protein C6G9.14 in chromosome I
Length = 681
Score = 29.6 bits (65), Expect = 7.4
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 13 FIYKLKTCTQ*KLQFNRMHKLIFF*INSVTERDVSRI----YIYKLIIFAFINY 162
F+YK++ + K N M K IFF ++ E+ +S + ++ KL+ +F NY
Sbjct: 561 FLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFANY 614
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,368,742
Number of Sequences: 369166
Number of extensions: 1277220
Number of successful extensions: 2934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2934
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)