Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_K01
(907 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 62 2e-09
sp|P10383|OTU_DROME Ovarian tumor locus protein 61 4e-09
sp|Q01804|HIN1_HUMAN Putative HIV-1-induced protein HIN-1 49 3e-05
sp|P22856|VL96_IRV1 L96 protein 47 6e-05
sp|O67037|RGYR1_AQUAE Reverse gyrase 1 [Includes: Helicase ... 31 4.2
sp|Q9JJT0|RCL1_MOUSE RNA 3'-terminal phosphate cyclase-like... 31 5.4
sp|Q8U380|MPGS_PYRFU Mannosyl-3-phosphoglycerate synthase (... 31 5.4
sp|Q9Y2P8|RCL1_HUMAN RNA 3'-terminal phosphate cyclase-like... 31 5.4
sp|P06701|SIR3_YEAST Regulatory protein SIR3 (Silent inform... 30 7.1
sp|Q6DD27|TAOK3_XENLA Serine/threonine-protein kinase TAO3 ... 30 9.3
>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3
Length = 398
Score = 62.0 bits (149), Expect = 2e-09
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Frame = +3
Query: 42 GWKIIVVGSDGACLFRAVAHQIFGDEEKHMIIREQVINYMKQNREHFSQFISED--FEHY 215
G K+ V DG CLFRA+ Q+ G H+ R++ ++YM + RE F F+ +D FE +
Sbjct: 64 GLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPFEKH 123
Query: 216 LIRKLDPHTHGNHVEIQAISELYNRPVEIYHNSLEPINVFHREYNDLPPLRLSYHGGIHY 395
+ P T + I A + + V I+ + + E + + L ++Y G HY
Sbjct: 124 VASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHY 183
Query: 396 NSI 404
+S+
Sbjct: 184 DSV 186
>sp|P10383|OTU_DROME Ovarian tumor locus protein
Length = 853
Score = 61.2 bits (147), Expect = 4e-09
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Frame = +3
Query: 69 DGACLFRAVAHQIFGDEEKHMIIREQVINYMKQNREHFSQFISEDFEHYLIRKLDPHTHG 248
D + LFR +A Q++ + H IR + + +M R F + I DF+ Y+ P T+G
Sbjct: 37 DASSLFRVIAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKEIPGDFDSYMQDMSKPKTYG 96
Query: 249 NHVEIQAISELYNRPVEIYHNSLEPIN-----VFHREYNDLPPLRLSYHGGIHYNSIVD 410
E++A+S LY R V +Y EP N VF+R Y + R+ ++ H++S+ D
Sbjct: 97 TMTELRAMSCLYRRNVILY----EPYNMGTSVVFNRRYAE--NFRVFFNNENHFDSVYD 149
>sp|Q01804|HIN1_HUMAN Putative HIV-1-induced protein HIN-1
Length = 145
Score = 48.5 bits (114), Expect = 3e-05
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 150 INYMKQNREHFSQFISEDFEHYLIRKLDPHTHGNHVEIQAISELYNRPVEIYHN-SLEPI 326
I+Y+++NRE F FI FE YL R +P VEI A+S +Y + IY ++ P
Sbjct: 4 IHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPS 63
Query: 327 NVFHREYNDLPPLRLSYHGGIHYNSI 404
V E N + L + G HY+ +
Sbjct: 64 QV--TENNFPEKVLLCFSNGNHYDIV 87
>sp|P22856|VL96_IRV1 L96 protein
Length = 867
Score = 47.4 bits (111), Expect = 6e-05
Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 24/175 (13%)
Frame = +3
Query: 24 LLKEKKGWKIIVVGSDGACLFRAVAHQIFGDEE---KHMIIREQVINYMKQNREHFSQFI 194
+L ++G+K+I V DG CLFRAV + ++ H +R QV+ Y+ ++E ++
Sbjct: 599 ILARRRGYKVIPVKGDGNCLFRAVGKSLRLNQNIKYSHEDLRAQVVTYLTSHKEFLEPYL 658
Query: 195 --------------SEDFEHYLIRKLDPHTHGNHVEIQAISELYNRPVEIYHNSLEPINV 332
+++ E Y+ P T G+ + ++ +SE+ + + V
Sbjct: 659 EYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFICLRVLSEILKVKFNLLILNTRNFQV 718
Query: 333 FHREYNDLPPLRLSYHGGIHYNSIVDPQNPTFGEGLGM-------PNYQPRLSEP 476
P + L + HY ++ P + E + + P+ P + P
Sbjct: 719 ISNNDTFKPLIPLGFIDDYHYTAL----TPLYAEPIAVLENETPTPSIAPSIRPP 769
>sp|O67037|RGYR1_AQUAE Reverse gyrase 1 [Includes: Helicase ; Topoisomerase ]
Length = 1146
Score = 31.2 bits (69), Expect = 4.2
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 141 EQVINYMKQNREHFSQFISEDFEHYLIRKLDPHTHGNHVEIQAISELYNRPVEIYHNSLE 320
+QV ++K +RE F+SE+F L +D G +Q + ELY + N E
Sbjct: 1089 KQVYEFLK-SREKIMPFVSEEFTRKLEELMDKVEEGKEDYLQVLDELYKKV-----NEFE 1142
Query: 321 PINV 332
NV
Sbjct: 1143 KANV 1146
>sp|Q9JJT0|RCL1_MOUSE RNA 3'-terminal phosphate cyclase-like protein
Length = 373
Score = 30.8 bits (68), Expect = 5.4
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 201 DFEHYLIRKLDPHTHGNHVEI-QAISELYNRPVEIYHNSLE 320
DFE IR LD T+G+ +EI Q + LY +P +Y S+E
Sbjct: 46 DFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVE 86
>sp|Q8U380|MPGS_PYRFU Mannosyl-3-phosphoglycerate synthase (MPG synthase) (MPGS)
Length = 394
Score = 30.8 bits (68), Expect = 5.4
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 165 QNREHFSQFISEDFEHYLIRKLDPHTHGNHVEIQAISELYNRPVEIYHNSLEPINVFHRE 344
+N E F + E + I L+PH H + + + IYH+ + N+ R
Sbjct: 286 ENVEEFKDVFDQGIEIFQIETLNPHFHEDKGQEHVREMILLSLATIYHSKMASKNLKRRI 345
Query: 345 YNDL 356
NDL
Sbjct: 346 LNDL 349
>sp|Q9Y2P8|RCL1_HUMAN RNA 3'-terminal phosphate cyclase-like protein
Length = 373
Score = 30.8 bits (68), Expect = 5.4
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 201 DFEHYLIRKLDPHTHGNHVEI-QAISELYNRPVEIYHNSLE 320
DFE IR LD T+G+ +EI Q + LY +P +Y S+E
Sbjct: 46 DFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVE 86
>sp|P06701|SIR3_YEAST Regulatory protein SIR3 (Silent information regulator 3)
Length = 978
Score = 30.4 bits (67), Expect = 7.1
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Frame = +3
Query: 15 MSTLLKEKKGWKIIVVGSDGACLF--RAVAHQIFGDEEKHMIIREQVINYMKQNREHFSQ 188
M+ LK+ GW++I+ G + + G E + +++ K F+
Sbjct: 1 MAKTLKDLDGWQVIITDDQGRVIDDNNRRRSRKRGGENVFLKRISDGLSFGKGESVIFND 60
Query: 189 FISEDFEHYLIRKLDPHTHGNHVEIQAISEL--YNRPVEIYHNSLEP 323
++E + YLI ++ +T N VEI S L + ++Y+ P
Sbjct: 61 NVTETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRP 107
>sp|Q6DD27|TAOK3_XENLA Serine/threonine-protein kinase TAO3 (Thousand and one amino acid
protein 3)
Length = 896
Score = 30.0 bits (66), Expect = 9.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = +3
Query: 93 VAHQIFGDEEKHMIIREQVINYMKQNREHFSQFI-------SEDFEHYLIRKLDPHTHGN 251
V QI E+++ + REQ+ Y + R+H Q I +E EH L + + TH N
Sbjct: 442 VTRQIHEHEQENEL-REQMSGYKRMRRQHQKQLIALENKLKAEMDEHRLKLQKEVETHAN 500
Query: 252 HVEIQ 266
+ I+
Sbjct: 501 NASIE 505
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,490,234
Number of Sequences: 369166
Number of extensions: 2149009
Number of successful extensions: 6358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6356
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)