Planaria EST Database

DrC_00999

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00999
         (721 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q24318|TDP_DROME  Transcription factor dp                       47   4e-05
sp|Q14186|TDP1_HUMAN  Transcription factor Dp-1 (E2F dimeriz...    40   0.006
sp|Q14188|TDP2_HUMAN  Transcription factor Dp-2 (E2F dimeriz...    40   0.008
sp|Q08639|TDP1_MOUSE  Transcription factor Dp-1 (E2F dimeriz...    39   0.011
sp|Q64163|TDP2_MOUSE  Transcription factor Dp-2 (E2F dimeriz...    39   0.011
sp|Q22703|TDP1_CAEEL  Transcription factor dpl-1                   39   0.018
sp|Q07283|TRHY_HUMAN  Trichohyalin                                 36   0.091
sp|O35942|NEK2_MOUSE  Serine/threonine-protein kinase Nek2 (...    36   0.091
sp|P35732|YKF4_YEAST  Hypothetical 84.0 kDa protein in NUP12...    32   2.2  
sp|P12393|SPI1_MYXVL  Serine proteinase inhibitor 1 (Serpin ...    31   2.9  

>sp|Q24318|TDP_DROME Transcription factor dp
          Length = 445

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 23/52 (44%), Positives = 29/52 (55%)
 Frame = +1

Query: 1   FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEA 156
           F FD+ FEM D+ + LK+ GF L L   +CT    +R    VP  L  YVEA
Sbjct: 334 FKFDKTFEMHDDIEVLKRMGFLLGLDKGECTPENIERVKSWVPPNLAKYVEA 385

>sp|Q14186|TDP1_HUMAN Transcription factor Dp-1 (E2F dimerization partner 1)
           (DRTF1-polypeptide-1) (DRTF1)
          Length = 410

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 1   FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAIYQ 165
           F FD  FE+ D+ + LK+ G    L +  C+    K    LVP  L  YV  + Q
Sbjct: 285 FNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQ 339

>sp|Q14188|TDP2_HUMAN Transcription factor Dp-2 (E2F dimerization partner 2)
          Length = 446

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 1   FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAI 159
           F FD  FE+ D+ + LK+ G +  L + +C+    K    LVP  L  Y+  I
Sbjct: 300 FNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDI 352

>sp|Q08639|TDP1_MOUSE Transcription factor Dp-1 (E2F dimerization partner 1)
           (DRTF1-polypeptide-1)
          Length = 410

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 1   FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAIYQ 165
           F FD  FE+ D+ + LK+ G    L +  C+    K    LVP  L  YV  + Q
Sbjct: 285 FNFDNTFEIHDDIEVLKRMGMACGLESGNCSAEDLKVARSLVPKALEPYVTEMAQ 339

>sp|Q64163|TDP2_MOUSE Transcription factor Dp-2 (E2F dimerization partner 2) (Dp-3)
          Length = 446

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 1   FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAI 159
           F FD  FE+ D+ + LK+ G +  L + +C+    K    LVP  L  Y+  I
Sbjct: 300 FNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKIARSLVPKALEGYITDI 352

>sp|Q22703|TDP1_CAEEL Transcription factor dpl-1
          Length = 598

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 1   FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAIYQQRPAI 180
           F+FD+ FE+ D+F+ LK+      L T+  T  + K     +P   + YV+ I   R  +
Sbjct: 243 FSFDKKFEIHDDFEILKKLNLACSLETTNPTAEEVKTAKSFLPTLHQHYVDEIIANRKKV 302

>sp|Q07283|TRHY_HUMAN Trichohyalin
          Length = 1898

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
 Frame = +3

Query: 120  AGAQHSQVLR*SYLPAAPRHRA*FRVPAPQEHGRRCASPLK--QEFVSSEQFRSQLVPAD 293
            A A+ S+VL    L A    RA    P  QE  RR  S L+  +E  +  Q + +    D
Sbjct: 731  ADARQSKVL----LEAPQAGRA--EAPQEQEEKRRRESELQWQEEERAHRQQQEEEQRRD 784

Query: 294  RRGQPELPEQSQQHFLVRTARVPLHDDRQALRVAEEIQQRLER---------QLGRSLRG 446
               Q +  E+S++     +AR PL + R+    AEE QQR +R         Q GR  R 
Sbjct: 785  FTWQWQAEEKSERGRQRLSARPPLREQRERQLRAEERQQREQRFLPEEEEKEQRGRQRRE 844

Query: 447  TSSEIQINYEPVTQFQRSQFDELRHE 524
               E+Q   E     +R +  +L+ E
Sbjct: 845  REKELQFLEEEEQLQRRERAQQLQEE 870

>sp|O35942|NEK2_MOUSE Serine/threonine-protein kinase Nek2 (NimA-related protein kinase
           2)
          Length = 443

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 231 SPLKQEFVSSEQFRSQLVPADRRGQP-ELPEQSQQHFLVRTARVPLHDDRQALRVAEEIQ 407
           SPL  + V+ EQ R+      R G+P +LP+ S     ++     L D  QALR  E+I 
Sbjct: 268 SPLIADMVAEEQRRNLERRGRRSGEPSKLPDSSPVLSELKLKESQLQDREQALRAREDIL 327

Query: 408 QRLERQL 428
           ++ ER+L
Sbjct: 328 EQKEREL 334

>sp|P35732|YKF4_YEAST Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic region
          Length = 738

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 19/77 (24%), Positives = 38/77 (49%)
 Frame = +3

Query: 303 QPELPEQSQQHFLVRTARVPLHDDRQALRVAEEIQQRLERQLGRSLRGTSSEIQINYEPV 482
           QP+ P+Q QQ    +  + P    +Q  +  ++ QQ ++ Q        + E Q++    
Sbjct: 395 QPQQPQQPQQPQQQQQPQQPQQPQQQLQQQQQQQQQPVQAQ------AQAQEEQLSQNYY 448

Query: 483 TQFQRSQFDELRHEISQ 533
           TQ Q+ Q+ + +H++ Q
Sbjct: 449 TQQQQQQYAQQQHQLQQ 465

>sp|P12393|SPI1_MYXVL Serine proteinase inhibitor 1 (Serpin 1) (Serp-1)
          Length = 369

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
 Frame = +1

Query: 1   FTFDQPF---------EMQDEFQTLKQSGFTLRLGTSQCTESQYKR----CLELVPNTLR 141
           FT DQPF          M ++  TLK   FTLR      TE  YKR     L +VP+ L 
Sbjct: 162 FTTDQPFYSGNVTYKVRMMNKIDTLKTETFTLRNVGYSVTELPYKRRQTAMLLVVPDDLG 221

Query: 142 FYVEAI 159
             V A+
Sbjct: 222 EIVRAL 227

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,439,546
Number of Sequences: 369166
Number of extensions: 1294248
Number of successful extensions: 3817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3815
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00999

  1. Dr_sW_025_D11
  2. Dr_sW_017_P07