Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_D11
(175 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24318|TDP_DROME Transcription factor dp 47 1e-05
sp|Q14186|TDP1_HUMAN Transcription factor Dp-1 (E2F dimeriz... 40 0.002
sp|Q14188|TDP2_HUMAN Transcription factor Dp-2 (E2F dimeriz... 40 0.002
sp|Q08639|TDP1_MOUSE Transcription factor Dp-1 (E2F dimeriz... 39 0.003
sp|Q64163|TDP2_MOUSE Transcription factor Dp-2 (E2F dimeriz... 39 0.003
sp|Q22703|TDP1_CAEEL Transcription factor dpl-1 38 0.006
sp|P12393|SPI1_MYXVL Serine proteinase inhibitor 1 (Serpin ... 31 0.77
sp|P96166|NAGA_VIBFU N-acetylglucosamine-6-phosphate deacet... 29 3.8
sp|P54740|PKAB_STRCO Serine/threonine protein kinase pkaB 28 6.5
sp|Q90Y54|JAG1B_BRARE Jagged-1b precursor (Jagged1b) (Jagged3) 28 8.5
>sp|Q24318|TDP_DROME Transcription factor dp
Length = 445
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 1 FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEA 156
F FD+ FEM D+ + LK+ GF L L +CT +R VP L YVEA
Sbjct: 334 FKFDKTFEMHDDIEVLKRMGFLLGLDKGECTPENIERVKSWVPPNLAKYVEA 385
>sp|Q14186|TDP1_HUMAN Transcription factor Dp-1 (E2F dimerization partner 1)
(DRTF1-polypeptide-1) (DRTF1)
Length = 410
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 1 FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAIYQ 165
F FD FE+ D+ + LK+ G L + C+ K LVP L YV + Q
Sbjct: 285 FNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQ 339
>sp|Q14188|TDP2_HUMAN Transcription factor Dp-2 (E2F dimerization partner 2)
Length = 446
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 1 FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAI 159
F FD FE+ D+ + LK+ G + L + +C+ K LVP L Y+ I
Sbjct: 300 FNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDI 352
>sp|Q08639|TDP1_MOUSE Transcription factor Dp-1 (E2F dimerization partner 1)
(DRTF1-polypeptide-1)
Length = 410
Score = 39.3 bits (90), Expect = 0.003
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 1 FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAIYQ 165
F FD FE+ D+ + LK+ G L + C+ K LVP L YV + Q
Sbjct: 285 FNFDNTFEIHDDIEVLKRMGMACGLESGNCSAEDLKVARSLVPKALEPYVTEMAQ 339
>sp|Q64163|TDP2_MOUSE Transcription factor Dp-2 (E2F dimerization partner 2) (Dp-3)
Length = 446
Score = 39.3 bits (90), Expect = 0.003
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 1 FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAI 159
F FD FE+ D+ + LK+ G + L + +C+ K LVP L Y+ I
Sbjct: 300 FNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKIARSLVPKALEGYITDI 352
>sp|Q22703|TDP1_CAEEL Transcription factor dpl-1
Length = 598
Score = 38.1 bits (87), Expect = 0.006
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 1 FTFDQPFEMQDEFQTLKQSGFTLRLGTSQCTESQYKRCLELVPNTLRFYVEAIYQQR 171
F+FD+ FE+ D+F+ LK+ L T+ T + K +P + YV+ I R
Sbjct: 243 FSFDKKFEIHDDFEILKKLNLACSLETTNPTAEEVKTAKSFLPTLHQHYVDEIIANR 299
>sp|P12393|SPI1_MYXVL Serine proteinase inhibitor 1 (Serpin 1) (Serp-1)
Length = 369
Score = 31.2 bits (69), Expect = 0.77
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Frame = +1
Query: 1 FTFDQPF---------EMQDEFQTLKQSGFTLRLGTSQCTESQYKR----CLELVPNTLR 141
FT DQPF M ++ TLK FTLR TE YKR L +VP+ L
Sbjct: 162 FTTDQPFYSGNVTYKVRMMNKIDTLKTETFTLRNVGYSVTELPYKRRQTAMLLVVPDDLG 221
Query: 142 FYVEAI 159
V A+
Sbjct: 222 EIVRAL 227
>sp|P96166|NAGA_VIBFU N-acetylglucosamine-6-phosphate deacetylase (GlcNAc 6-P
deacetylase)
Length = 399
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 24 DARRISDAEAVGIHSALGHLAVHREPVQALLGAGAQ 131
DA R DA GIH LGH E V+A L AGA+
Sbjct: 185 DAIRYLDAH--GIHVMLGHSDADYEQVKAALAAGAK 218
>sp|P54740|PKAB_STRCO Serine/threonine protein kinase pkaB
Length = 417
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 124 PAPSSACTGSRCTARCPSAE*IPTASASEIRLASR 20
PAP G+R TAR P A P ++ R A+R
Sbjct: 338 PAPDELAGGARGTARAPRASGAPRPGSARNRAATR 372
>sp|Q90Y54|JAG1B_BRARE Jagged-1b precursor (Jagged1b) (Jagged3)
Length = 1213
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 86 CEVPKRRVNPDCFSV*NSSCISNG 15
C P R+ PDC V CI+NG
Sbjct: 841 CLCPPGRIGPDCQEVVGRPCIANG 864
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,222,957
Number of Sequences: 369166
Number of extensions: 240877
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)