DrC_00994
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00994 (520 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 75 1e-13 sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 74 3e-13 sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41 32 1.2 sp|Q7P012|HEM6_CHRVO Coproporphyrinogen III oxidase, aerobi... 31 1.5 sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich ... 31 2.0 sp|P98167|SSPO_BOVIN SCO-spondin 31 2.0 sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich ... 30 4.5 sp|P23038|MT_CRAVI Metallothionein (MT) 29 5.9 sp|Q6ZVD8|PHLPL_HUMAN PH domain leucine-rich repeat protein... 29 5.9
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein) Length = 115 Score = 74.7 bits (182), Expect = 1e-13 Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Frame = +1 Query: 118 DWQHGLCSCFDDCGLCLVSFFC-PCYTVGVDAEAVGESCCLCGFAVLTPAACFTVPLVRS 294 +WQ G+C CF DCG+CL FC PC +G A CCLCG +V +R+ Sbjct: 25 NWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSV----------AMRT 72 Query: 295 YIRDRQKIPGSYLEDFCLFLFCPFCTAAQMHQETYEFGAM 414 R R IPGS +D+ L CP CT Q+ ++ AM Sbjct: 73 LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAM 112
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin) Length = 112 Score = 73.6 bits (179), Expect = 3e-13 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = +1 Query: 118 DWQHGLCSCFDDCGLCLVSFFCPCYT-VGVDAEAVGESCCLCGFAVLTPAACFTVPLVRS 294 +WQ LC CF DCG+CL FC +T +G A CCLCG T +R+ Sbjct: 22 NWQTSLCDCFSDCGVCLCGTFC--FTCLGCQVAADMNECCLCG----------TTVAMRT 69 Query: 295 YIRDRQKIPGSYLEDFCLFLFCPFCTAAQMHQETYEFGAMS 417 R R IPGS +D+ + LFCP C+ Q+ ++ AM+ Sbjct: 70 LYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINRRRAMN 110
>sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41 Length = 670 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 451 NNNKFIHVQWLAT*HQTHKFLDASEQRYKKDKTETNKNLLNN 326 +NN F H+Q LA+ H+ + S + K DK N N NN Sbjct: 21 DNNPFPHMQGLASLMSEHRISNGSNIQDKGDKDNNNNNNYNN 62
>sp|Q7P012|HEM6_CHRVO Coproporphyrinogen III oxidase, aerobic (Coproporphyrinogenase) (Coprogen oxidase) Length = 302 Score = 31.2 bits (69), Expect = 1.5 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = -3 Query: 308 RSRM*LLTNGTVKQAAGVNTANPHKQQLSPTASASTP 198 RSR+ LT G V + AGVN ++ H L P+ASA P Sbjct: 47 RSRV--LTGGEVFEQAGVNFSHVHGDALPPSASAHRP 81
>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein precursor Length = 852 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Frame = +1 Query: 124 QHGLCSCFDDCGLCLVSFFCPCYTVGVDAEAVGESC--CL-CGFAVLTPAACFTVPLVRS 294 Q LC C C C C D +++GE C C C F L P C TV S Sbjct: 776 QGSLCGYCTFCNRCTECEHCHC-----DEDSMGEHCDQCQHCQFCYLCPLVCETVCTPGS 830 Query: 295 YI 300 Y+ Sbjct: 831 YV 832
>sp|P98167|SSPO_BOVIN SCO-spondin Length = 867 Score = 30.8 bits (68), Expect = 2.0 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = +1 Query: 121 WQHG---LCSCFDDCGLCLVSFFCP---CYTVGVDAEAVGESCCLC 240 W+ G +C C D G S +CP C V E VGESCC C Sbjct: 259 WRAGPCRVCQCLHD-GSARCSPYCPLGSCPQDWVLVEGVGESCCHC 303
>sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich calcium-binding protein precursor Length = 699 Score = 29.6 bits (65), Expect = 4.5 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Frame = +1 Query: 154 CGLCLVSFFCP-CYTVGVDAEAVGESC--CL-CGFAVLTPAACFTVPLVRSYI 300 CG C C C + D E +GE C C C F L P C TV SY+ Sbjct: 627 CGYCSFCNRCTECESCHCDEENMGEHCDQCQHCQFCYLCPLVCETVCAPGSYV 679
>sp|P23038|MT_CRAVI Metallothionein (MT) Length = 75 Score = 29.3 bits (64), Expect = 5.9 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 8/55 (14%) Frame = +1 Query: 130 GLCSCFDDCGL--------CLVSFFCPCYTVGVDAEAVGESCCLCGFAVLTPAAC 270 G C+C D C C C C V E C CG PA C Sbjct: 11 GTCACSDSCPATGCKCGPGCKCGDDCKCAGCKVKCSCTSEGGCKCGEKCTGPATC 65
>sp|Q6ZVD8|PHLPL_HUMAN PH domain leucine-rich repeat protein phosphatase-like Length = 1323 Score = 29.3 bits (64), Expect = 5.9 Identities = 22/54 (40%), Positives = 30/54 (55%) Frame = -1 Query: 340 NLLNNFQEFFVGLECSSLPMEL*NKQQVSTLQIHINNSFLQLLQHQLRLYSMDR 179 NLLN G ++LP EL N QQ+S+L I NN F Q+ + +L +DR Sbjct: 343 NLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISFNN-FSQIPEVYEKLTMLDR 395
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,996,093
Number of Sequences: 369166
Number of extensions: 937474
Number of successful extensions: 2575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2568
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
