Planarian EST Database


Dr_sW_022_B12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_022_B12
         (398 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NZF1|PLAC8_HUMAN  Placenta-specific gene 8 protein (C15...    74   1e-13
sp|Q9JI48|PLAC8_MOUSE  Placenta-specific gene 8 protein (C15...    74   1e-13
sp|Q6BHN9|SNX41_DEBHA  Sorting nexin-41                            32   0.59 
sp|P98167|SSPO_BOVIN  SCO-spondin                                  31   1.0  
sp|Q7P012|HEM6_CHRVO  Coproporphyrinogen III oxidase, aerobi...    30   1.3  
sp|P16230|SRCH_RABIT  Sarcoplasmic reticulum histidine-rich ...    30   1.7  
sp|P04155|TFF1_HUMAN  Trefoil factor 1 precursor (pS2 protei...    30   1.7  
sp|Q6ZVD8|PHLPL_HUMAN  PH domain leucine-rich repeat protein...    29   3.0  
sp|P23327|SRCH_HUMAN  Sarcoplasmic reticulum histidine-rich ...    29   3.9  
sp|P23038|MT_CRAVI  Metallothionein (MT)                           28   5.0  
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
          Length = 115

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
 Frame = +1

Query: 64  DWQHGLCSCFDDCGLCLVSFFC-PCYTVGVDAEAVGESCCLCGFAGLTPAACFTVPLVRS 240
           +WQ G+C CF DCG+CL   FC PC  +G    A    CCLCG          T   +R+
Sbjct: 25  NWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCG----------TSVAMRT 72

Query: 241 YIRDRQKIPGSYLEDFCLFLFCPFCTAAQMHQETYEFGAM 360
             R R  IPGS  +D+   L CP CT  Q+ ++     AM
Sbjct: 73  LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAM 112
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
          Length = 112

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +1

Query: 64  DWQHGLCSCFDDCGLCLVSFFCPCYT-VGVDAEAVGESCCLCGFAGLTPAACFTVPLVRS 240
           +WQ  LC CF DCG+CL   FC  +T +G    A    CCLCG          T   +R+
Sbjct: 22  NWQTSLCDCFSDCGVCLCGTFC--FTCLGCQVAADMNECCLCG----------TTVAMRT 69

Query: 241 YIRDRQKIPGSYLEDFCLFLFCPFCTAAQMHQETYEFGAMS 363
             R R  IPGS  +D+ + LFCP C+  Q+ ++     AM+
Sbjct: 70  LYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINRRRAMN 110
>sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41
          Length = 670

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 397 NNNKFIHVQWLAT*HQTHKFLDASEQRYKKDKTETNKNLLNN 272
           +NN F H+Q LA+    H+  + S  + K DK   N N  NN
Sbjct: 21  DNNPFPHMQGLASLMSEHRISNGSNIQDKGDKDNNNNNNYNN 62
>sp|P98167|SSPO_BOVIN SCO-spondin
          Length = 867

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +1

Query: 67  WQHG---LCSCFDDCGLCLVSFFCP---CYTVGVDAEAVGESCCLC 186
           W+ G   +C C  D G    S +CP   C    V  E VGESCC C
Sbjct: 259 WRAGPCRVCQCLHD-GSARCSPYCPLGSCPQDWVLVEGVGESCCHC 303
>sp|Q7P012|HEM6_CHRVO Coproporphyrinogen III oxidase, aerobic (Coproporphyrinogenase)
           (Coprogen oxidase)
          Length = 302

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = -1

Query: 254 RSRM*LLTNGTVKQAAGVNPANPHKQQLSPTASASTP 144
           RSR+  LT G V + AGVN ++ H   L P+ASA  P
Sbjct: 47  RSRV--LTGGEVFEQAGVNFSHVHGDALPPSASAHRP 81
>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein
           precursor
          Length = 852

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
 Frame = +1

Query: 70  QHGLCSCFDDCGLCLVSFFCPCYTVGVDAEAVGESC--CL-CGFAGLTPAACFTVPLVRS 240
           Q  LC     C  C     C C     D +++GE C  C  C F  L P  C TV    S
Sbjct: 776 QGSLCGYCTFCNRCTECEHCHC-----DEDSMGEHCDQCQHCQFCYLCPLVCETVCTPGS 830

Query: 241 YI 246
           Y+
Sbjct: 831 YV 832
>sp|P04155|TFF1_HUMAN Trefoil factor 1 precursor (pS2 protein) (HP1.A) (Breast cancer
           estrogen-inducible protein) (PNR-2)
          Length = 84

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = +1

Query: 100 CGLCLVSFFCPCYTVGVDAEAVGESCCL-------CGFAGLTPAAC 216
           C L LVS       +G  AEA  E+C +       CGF G+TP+ C
Sbjct: 10  CALVLVSMLA----LGTLAEAQTETCTVApreRQNCGFPGVTPSQC 51
>sp|Q6ZVD8|PHLPL_HUMAN PH domain leucine-rich repeat protein phosphatase-like
          Length = 1323

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 22/54 (40%), Positives = 30/54 (55%)
 Frame = -2

Query: 286 NLLNNFQEFFVGLECSSLPMEL*NKQQVSTLQIHINNSFLQLLQHQLRLYSMDR 125
           NLLN       G   ++LP EL N QQ+S+L I  NN F Q+ +   +L  +DR
Sbjct: 343 NLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISFNN-FSQIPEVYEKLTMLDR 395
>sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich calcium-binding protein
           precursor
          Length = 699

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +1

Query: 100 CGLCLVSFFCP-CYTVGVDAEAVGESC--CL-CGFAGLTPAACFTVPLVRSYI 246
           CG C     C  C +   D E +GE C  C  C F  L P  C TV    SY+
Sbjct: 627 CGYCSFCNRCTECESCHCDEENMGEHCDQCQHCQFCYLCPLVCETVCAPGSYV 679
>sp|P23038|MT_CRAVI Metallothionein (MT)
          Length = 75

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
 Frame = +1

Query: 76  GLCSCFDDCGL--------CLVSFFCPCYTVGVDAEAVGESCCLCGFAGLTPAAC 216
           G C+C D C          C     C C    V      E  C CG     PA C
Sbjct: 11  GTCACSDSCPATGCKCGPGCKCGDDCKCAGCKVKCSCTSEGGCKCGEKCTGPATC 65
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,854,104
Number of Sequences: 369166
Number of extensions: 867552
Number of successful extensions: 2556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2553
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)