Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_H12
(422 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 75 7e-14
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 74 2e-13
sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41 32 0.71
sp|Q7P012|HEM6_CHRVO Coproporphyrinogen III oxidase, aerobi... 31 0.93
sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich ... 31 1.2
sp|P98167|SSPO_BOVIN SCO-spondin 31 1.2
sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich ... 30 2.7
sp|P23038|MT_CRAVI Metallothionein (MT) 29 3.5
sp|Q6ZVD8|PHLPL_HUMAN PH domain leucine-rich repeat protein... 29 3.5
sp|P98095|FBLN2_HUMAN Fibulin-2 precursor 28 6.0
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 74.7 bits (182), Expect = 7e-14
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 63 DWQHGLCSCFDDCGLCLVSFFC-PCYTVGVDAEAVGESCCLCGFAVLTPAACFTVPLVRS 239
+WQ G+C CF DCG+CL FC PC +G A CCLCG +V +R+
Sbjct: 25 NWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSV----------AMRT 72
Query: 240 YIRDRQKIPGSYLEDFCLFLFCPFCTAAQMHQETYEFGAM 359
R R IPGS +D+ L CP CT Q+ ++ AM
Sbjct: 73 LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAM 112
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 73.6 bits (179), Expect = 2e-13
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +3
Query: 63 DWQHGLCSCFDDCGLCLVSFFCPCYT-VGVDAEAVGESCCLCGFAVLTPAACFTVPLVRS 239
+WQ LC CF DCG+CL FC +T +G A CCLCG T +R+
Sbjct: 22 NWQTSLCDCFSDCGVCLCGTFC--FTCLGCQVAADMNECCLCG----------TTVAMRT 69
Query: 240 YIRDRQKIPGSYLEDFCLFLFCPFCTAAQMHQETYEFGAMS 362
R R IPGS +D+ + LFCP C+ Q+ ++ AM+
Sbjct: 70 LYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINRRRAMN 110
>sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41
Length = 670
Score = 31.6 bits (70), Expect = 0.71
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 396 NNNKFIHVQWLAT*HQTHKFLDASEQRYKKDKTETNKNLLNN 271
+NN F H+Q LA+ H+ + S + K DK N N NN
Sbjct: 21 DNNPFPHMQGLASLMSEHRISNGSNIQDKGDKDNNNNNNYNN 62
>sp|Q7P012|HEM6_CHRVO Coproporphyrinogen III oxidase, aerobic (Coproporphyrinogenase)
(Coprogen oxidase)
Length = 302
Score = 31.2 bits (69), Expect = 0.93
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = -2
Query: 253 RSRM*LLTNGTVKQAAGVNTANPHKQQLSPTASASTP 143
RSR+ LT G V + AGVN ++ H L P+ASA P
Sbjct: 47 RSRV--LTGGEVFEQAGVNFSHVHGDALPPSASAHRP 81
>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 852
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +3
Query: 69 QHGLCSCFDDCGLCLVSFFCPCYTVGVDAEAVGESC--CL-CGFAVLTPAACFTVPLVRS 239
Q LC C C C C D +++GE C C C F L P C TV S
Sbjct: 776 QGSLCGYCTFCNRCTECEHCHC-----DEDSMGEHCDQCQHCQFCYLCPLVCETVCTPGS 830
Query: 240 YI 245
Y+
Sbjct: 831 YV 832
>sp|P98167|SSPO_BOVIN SCO-spondin
Length = 867
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = +3
Query: 66 WQHG---LCSCFDDCGLCLVSFFCP---CYTVGVDAEAVGESCCLC 185
W+ G +C C D G S +CP C V E VGESCC C
Sbjct: 259 WRAGPCRVCQCLHD-GSARCSPYCPLGSCPQDWVLVEGVGESCCHC 303
>sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 699
Score = 29.6 bits (65), Expect = 2.7
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +3
Query: 99 CGLCLVSFFCP-CYTVGVDAEAVGESC--CL-CGFAVLTPAACFTVPLVRSYI 245
CG C C C + D E +GE C C C F L P C TV SY+
Sbjct: 627 CGYCSFCNRCTECESCHCDEENMGEHCDQCQHCQFCYLCPLVCETVCAPGSYV 679
>sp|P23038|MT_CRAVI Metallothionein (MT)
Length = 75
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Frame = +3
Query: 75 GLCSCFDDCGL--------CLVSFFCPCYTVGVDAEAVGESCCLCGFAVLTPAAC 215
G C+C D C C C C V E C CG PA C
Sbjct: 11 GTCACSDSCPATGCKCGPGCKCGDDCKCAGCKVKCSCTSEGGCKCGEKCTGPATC 65
>sp|Q6ZVD8|PHLPL_HUMAN PH domain leucine-rich repeat protein phosphatase-like
Length = 1323
Score = 29.3 bits (64), Expect = 3.5
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = -3
Query: 285 NLLNNFQEFFVGLECSSLPMEL*NKQQVSTLQIHINNSFLQLLQHQLRLYSMDR 124
NLLN G ++LP EL N QQ+S+L I NN F Q+ + +L +DR
Sbjct: 343 NLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISFNN-FSQIPEVYEKLTMLDR 395
>sp|P98095|FBLN2_HUMAN Fibulin-2 precursor
Length = 1184
Score = 28.5 bits (62), Expect = 6.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 93 DDCGLCLVSFFCPCYTVGVDAEAVGESC 176
D CG+ L C C +G+ A G+SC
Sbjct: 508 DSCGISLYKQCCDCCGLGLRVRAEGQSC 535
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,002,873
Number of Sequences: 369166
Number of extensions: 879041
Number of successful extensions: 2532
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)