Planaria EST Database

DrC_00989

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00989
         (571 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23514|COPB_RAT  Coatomer beta subunit (Beta-coat protein...   204   1e-52
sp|Q9JIF7|COPB_MOUSE  Coatomer beta subunit (Beta-coat prote...   204   2e-52
sp|P53618|COPB_HUMAN  Coatomer beta subunit (Beta-coat prote...   194   1e-49
sp|P45437|COPB_DROME  Coatomer beta subunit (Beta-coat prote...   193   2e-49
sp|P41810|COPB_YEAST  Coatomer beta subunit (Beta-coat prote...   158   8e-39
sp|Q23924|COPB_DICDI  Probable coatomer beta subunit (Beta-c...   142   4e-34
sp|Q9UUF7|COPB_SCHPO  Coatomer beta subunit (Beta-coat prote...   133   4e-31
sp|Q9MLJ7|CYB_CALJP  Cytochrome b                                  32   0.85 
sp|P98164|LRP2_HUMAN  Low-density lipoprotein receptor-relat...    32   1.1  
sp|Q9MLJ1|CYB_PARMU  Cytochrome b                                  32   1.1  

>sp|P23514|COPB_RAT Coatomer beta subunit (Beta-coat protein) (Beta-COP)
          Length = 953

 Score =  204 bits (520), Expect = 1e-52
 Identities = 95/151 (62%), Positives = 122/151 (80%), Gaps = 3/151 (1%)
 Frame = +2

Query: 2    FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
            FGNIVYDVSGAA + NCVVL+DIHIDI++YI PA+C+ + +R+MW EFEWENKVTVNT +
Sbjct: 800  FGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNV 859

Query: 182  KDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKPPGDEP 361
             DL+ YL HI K+TNM+CLTP +AL G C ++   LYA+SIFGE  LAN+ +EKP    P
Sbjct: 860  TDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGP 919

Query: 362  ---VTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
               VTGH+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 920  DAAVTGHIRIRAKSQGMALSLGDKINLSQKK 950

>sp|Q9JIF7|COPB_MOUSE Coatomer beta subunit (Beta-coat protein) (Beta-COP)
          Length = 953

 Score =  204 bits (518), Expect = 2e-52
 Identities = 95/151 (62%), Positives = 122/151 (80%), Gaps = 3/151 (1%)
 Frame = +2

Query: 2    FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
            FGNIVYDVSGAA + NCVVL+DIHIDI++YI PA+C+ + +R+MW EFEWENKVTVNT +
Sbjct: 800  FGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNM 859

Query: 182  KDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKPPGDEP 361
             DL+ YL HI K+TNM+CLTP +AL G C ++   LYA+SIFGE  LAN+ +EKP    P
Sbjct: 860  TDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGP 919

Query: 362  ---VTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
               VTGH+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 920  DAAVTGHIRIRAKSQGMALSLGDKINLSQKK 950

>sp|P53618|COPB_HUMAN Coatomer beta subunit (Beta-coat protein) (Beta-COP)
          Length = 953

 Score =  194 bits (494), Expect = 1e-49
 Identities = 92/151 (60%), Positives = 119/151 (78%), Gaps = 3/151 (1%)
 Frame = +2

Query: 2    FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
            FGNIVYDVSGAA + NCVVL+DIHI+I++YI PA+C+ + +R+MW E EWENKVTVNT +
Sbjct: 800  FGNIVYDVSGAASDRNCVVLSDIHIEIMDYIQPATCTDAEFRQMWAELEWENKVTVNTNM 859

Query: 182  KDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKP---PG 352
             DL+ YL HI K+TNM+CLTP +AL G C ++   LYA+SIFGE  LAN+  EKP     
Sbjct: 860  VDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSSEKPLHQGP 919

Query: 353  DEPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
            D  VT H+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 920  DAAVTVHIRIRAKSQGMALSLGDKINLSQKE 950

>sp|P45437|COPB_DROME Coatomer beta subunit (Beta-coat protein) (Beta-COP)
          Length = 964

 Score =  193 bits (491), Expect = 2e-49
 Identities = 91/150 (60%), Positives = 118/150 (78%), Gaps = 2/150 (1%)
 Frame = +2

Query: 2    FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
            FGNIVY+    A   N VVLN IHIDI++YI+PASC+ + +R+MW +FEWENKVTVNT  
Sbjct: 813  FGNIVYET---ALNTNVVVLNTIHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSF 869

Query: 182  KDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKP--PGD 355
             DLH YL H+ K+TNM+CLTP +AL G+C ++   +YAKSIFGE+ LAN+ +EKP    D
Sbjct: 870  TDLHEYLKHLLKSTNMKCLTPEKALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPD 929

Query: 356  EPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
              VTGH+RIRAKSQGMA+++G+KIS++QKQ
Sbjct: 930  SKVTGHIRIRAKSQGMALSLGDKISSSQKQ 959

>sp|P41810|COPB_YEAST Coatomer beta subunit (Beta-coat protein) (Beta-COP)
          Length = 973

 Score =  158 bits (400), Expect = 8e-39
 Identities = 75/150 (50%), Positives = 105/150 (70%), Gaps = 2/150 (1%)
 Frame = +2

Query: 2    FGNIVYDVSGAAGE-CNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTK 178
            FGNI+YD  GA GE    V+LND+H+DI++YI PA+    H+R MWN FEWENK++V ++
Sbjct: 817  FGNIIYD--GAHGEDARYVILNDVHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQ 874

Query: 179  IKDLHLYLNHITKNTNMRCLTPPEAL-EGECDYLCVTLYAKSIFGEHVLANICLEKPPGD 355
            +  LH YL  + K TNM  LTP E+L E +C +L   LYAKS FGE  LAN+C+EK    
Sbjct: 875  LPTLHAYLRELVKGTNMGILTPSESLGEDDCRFLSCNLYAKSSFGEDALANLCIEKDSKT 934

Query: 356  EPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
              V G+VRIR+K QG+A+++G++++   K+
Sbjct: 935  NDVIGYVRIRSKGQGLALSLGDRVALIAKK 964

>sp|Q23924|COPB_DICDI Probable coatomer beta subunit (Beta-coat protein) (Beta-COP)
          Length = 400

 Score =  142 bits (359), Expect = 4e-34
 Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 5/146 (3%)
 Frame = +2

Query: 5   GNIVYDVSGAAGEC---NCVVLNDIHIDILEYIMPASCSRSH--YRKMWNEFEWENKVTV 169
           G I +D++G+       NCV+LN++HID+++YI+PA+   +   +R  W EFEWENK+ V
Sbjct: 249 GTIAFDIAGSVSSMSDKNCVILNELHIDVIDYILPANHQYTDVLFRNHWLEFEWENKIPV 308

Query: 170 NTKIKDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKPP 349
           NT I DL  Y++HI+K TNM  LTP   L  +   L   L AKS+FGE  LANIC+EK  
Sbjct: 309 NTNITDLVKYVHHISKVTNMGILTPEVHLSNDTGILSANLCAKSVFGEDALANICIEK-Q 367

Query: 350 GDEPVTGHVRIRAKSQGMAVTMGEKI 427
            D  ++G++RIRAK Q +AVT+GEKI
Sbjct: 368 ADGKISGYIRIRAKVQSIAVTLGEKI 393

>sp|Q9UUF7|COPB_SCHPO Coatomer beta subunit (Beta-coat protein) (Beta-COP)
          Length = 940

 Score =  133 bits (334), Expect = 4e-31
 Identities = 70/141 (49%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
 Frame = +2

Query: 2    FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
            FGNIVY    A+ E   VVLN I ++I++YI PA    S +R MW EFEWENKV +++  
Sbjct: 800  FGNIVYG-GKASDEDKIVVLNGIPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSN- 857

Query: 182  KDLHLY--LNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKPPGD 355
            +D+ LY  L+ I K TNM CLTP  +L G+C +L   LYA SIFGE  L ++ +EK    
Sbjct: 858  EDISLYDFLHKIMKKTNMNCLTPDASLRGDCGFLSANLYACSIFGEDALMSLSVEKSVSG 917

Query: 356  EPVTGHVRIRAKSQGMAVTMG 418
             P++GHVRIR+K+QG+A+++G
Sbjct: 918  -PISGHVRIRSKTQGIALSLG 937

>sp|Q9MLJ7|CYB_CALJP Cytochrome b
          Length = 372

 Score = 32.3 bits (72), Expect = 0.85
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 441 FWAALIFSPIVTAIPWLLARILTW 370
           FWAA + + ++TAIP+L A + TW
Sbjct: 132 FWAATVITNLLTAIPYLGATVTTW 155

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 precursor
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4655

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +2

Query: 137  NEFEWENKVTVNTKIKDLHLYLNHITKNTNMRCLTPPEALEGECDYLC 280
            N+++   ++ + T +      +N + KN   +C  P E   G C ++C
Sbjct: 2619 NKYDGSGQIAMTTNLLSQPRGINTVVKNQKQQCNNPCEQFNGGCSHIC 2666

>sp|Q9MLJ1|CYB_PARMU Cytochrome b
          Length = 372

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 441 FWAALIFSPIVTAIPWLLARILTW 370
           FWAA + + ++TAIP+L A + TW
Sbjct: 132 FWAATVITNLLTAIPYLGATLTTW 155

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,168,972
Number of Sequences: 369166
Number of extensions: 1561636
Number of successful extensions: 5360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5347
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00989

  1. Dr_sW_024_P15
  2. Dr_sW_017_O08