Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_P15
(571 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23514|COPB_RAT Coatomer beta subunit (Beta-coat protein... 204 1e-52
sp|Q9JIF7|COPB_MOUSE Coatomer beta subunit (Beta-coat prote... 204 2e-52
sp|P53618|COPB_HUMAN Coatomer beta subunit (Beta-coat prote... 194 1e-49
sp|P45437|COPB_DROME Coatomer beta subunit (Beta-coat prote... 193 2e-49
sp|P41810|COPB_YEAST Coatomer beta subunit (Beta-coat prote... 158 8e-39
sp|Q23924|COPB_DICDI Probable coatomer beta subunit (Beta-c... 142 4e-34
sp|Q9UUF7|COPB_SCHPO Coatomer beta subunit (Beta-coat prote... 133 4e-31
sp|Q9MLJ7|CYB_CALJP Cytochrome b 32 0.85
sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-relat... 32 1.1
sp|Q9MLJ1|CYB_PARMU Cytochrome b 32 1.1
>sp|P23514|COPB_RAT Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 953
Score = 204 bits (520), Expect = 1e-52
Identities = 95/151 (62%), Positives = 122/151 (80%), Gaps = 3/151 (1%)
Frame = +2
Query: 2 FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
FGNIVYDVSGAA + NCVVL+DIHIDI++YI PA+C+ + +R+MW EFEWENKVTVNT +
Sbjct: 800 FGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNV 859
Query: 182 KDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKPPGDEP 361
DL+ YL HI K+TNM+CLTP +AL G C ++ LYA+SIFGE LAN+ +EKP P
Sbjct: 860 TDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGP 919
Query: 362 ---VTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
VTGH+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 920 DAAVTGHIRIRAKSQGMALSLGDKINLSQKK 950
>sp|Q9JIF7|COPB_MOUSE Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 953
Score = 204 bits (518), Expect = 2e-52
Identities = 95/151 (62%), Positives = 122/151 (80%), Gaps = 3/151 (1%)
Frame = +2
Query: 2 FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
FGNIVYDVSGAA + NCVVL+DIHIDI++YI PA+C+ + +R+MW EFEWENKVTVNT +
Sbjct: 800 FGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNM 859
Query: 182 KDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKPPGDEP 361
DL+ YL HI K+TNM+CLTP +AL G C ++ LYA+SIFGE LAN+ +EKP P
Sbjct: 860 TDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGP 919
Query: 362 ---VTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
VTGH+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 920 DAAVTGHIRIRAKSQGMALSLGDKINLSQKK 950
>sp|P53618|COPB_HUMAN Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 953
Score = 194 bits (494), Expect = 1e-49
Identities = 92/151 (60%), Positives = 119/151 (78%), Gaps = 3/151 (1%)
Frame = +2
Query: 2 FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
FGNIVYDVSGAA + NCVVL+DIHI+I++YI PA+C+ + +R+MW E EWENKVTVNT +
Sbjct: 800 FGNIVYDVSGAASDRNCVVLSDIHIEIMDYIQPATCTDAEFRQMWAELEWENKVTVNTNM 859
Query: 182 KDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKP---PG 352
DL+ YL HI K+TNM+CLTP +AL G C ++ LYA+SIFGE LAN+ EKP
Sbjct: 860 VDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSSEKPLHQGP 919
Query: 353 DEPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
D VT H+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 920 DAAVTVHIRIRAKSQGMALSLGDKINLSQKE 950
>sp|P45437|COPB_DROME Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 964
Score = 193 bits (491), Expect = 2e-49
Identities = 91/150 (60%), Positives = 118/150 (78%), Gaps = 2/150 (1%)
Frame = +2
Query: 2 FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
FGNIVY+ A N VVLN IHIDI++YI+PASC+ + +R+MW +FEWENKVTVNT
Sbjct: 813 FGNIVYET---ALNTNVVVLNTIHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSF 869
Query: 182 KDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKP--PGD 355
DLH YL H+ K+TNM+CLTP +AL G+C ++ +YAKSIFGE+ LAN+ +EKP D
Sbjct: 870 TDLHEYLKHLLKSTNMKCLTPEKALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPD 929
Query: 356 EPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
VTGH+RIRAKSQGMA+++G+KIS++QKQ
Sbjct: 930 SKVTGHIRIRAKSQGMALSLGDKISSSQKQ 959
>sp|P41810|COPB_YEAST Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 973
Score = 158 bits (400), Expect = 8e-39
Identities = 75/150 (50%), Positives = 105/150 (70%), Gaps = 2/150 (1%)
Frame = +2
Query: 2 FGNIVYDVSGAAGE-CNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTK 178
FGNI+YD GA GE V+LND+H+DI++YI PA+ H+R MWN FEWENK++V ++
Sbjct: 817 FGNIIYD--GAHGEDARYVILNDVHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQ 874
Query: 179 IKDLHLYLNHITKNTNMRCLTPPEAL-EGECDYLCVTLYAKSIFGEHVLANICLEKPPGD 355
+ LH YL + K TNM LTP E+L E +C +L LYAKS FGE LAN+C+EK
Sbjct: 875 LPTLHAYLRELVKGTNMGILTPSESLGEDDCRFLSCNLYAKSSFGEDALANLCIEKDSKT 934
Query: 356 EPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 445
V G+VRIR+K QG+A+++G++++ K+
Sbjct: 935 NDVIGYVRIRSKGQGLALSLGDRVALIAKK 964
>sp|Q23924|COPB_DICDI Probable coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 400
Score = 142 bits (359), Expect = 4e-34
Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 5/146 (3%)
Frame = +2
Query: 5 GNIVYDVSGAAGEC---NCVVLNDIHIDILEYIMPASCSRSH--YRKMWNEFEWENKVTV 169
G I +D++G+ NCV+LN++HID+++YI+PA+ + +R W EFEWENK+ V
Sbjct: 249 GTIAFDIAGSVSSMSDKNCVILNELHIDVIDYILPANHQYTDVLFRNHWLEFEWENKIPV 308
Query: 170 NTKIKDLHLYLNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKPP 349
NT I DL Y++HI+K TNM LTP L + L L AKS+FGE LANIC+EK
Sbjct: 309 NTNITDLVKYVHHISKVTNMGILTPEVHLSNDTGILSANLCAKSVFGEDALANICIEK-Q 367
Query: 350 GDEPVTGHVRIRAKSQGMAVTMGEKI 427
D ++G++RIRAK Q +AVT+GEKI
Sbjct: 368 ADGKISGYIRIRAKVQSIAVTLGEKI 393
>sp|Q9UUF7|COPB_SCHPO Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 940
Score = 133 bits (334), Expect = 4e-31
Identities = 70/141 (49%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
Frame = +2
Query: 2 FGNIVYDVSGAAGECNCVVLNDIHIDILEYIMPASCSRSHYRKMWNEFEWENKVTVNTKI 181
FGNIVY A+ E VVLN I ++I++YI PA S +R MW EFEWENKV +++
Sbjct: 800 FGNIVYG-GKASDEDKIVVLNGIPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSN- 857
Query: 182 KDLHLY--LNHITKNTNMRCLTPPEALEGECDYLCVTLYAKSIFGEHVLANICLEKPPGD 355
+D+ LY L+ I K TNM CLTP +L G+C +L LYA SIFGE L ++ +EK
Sbjct: 858 EDISLYDFLHKIMKKTNMNCLTPDASLRGDCGFLSANLYACSIFGEDALMSLSVEKSVSG 917
Query: 356 EPVTGHVRIRAKSQGMAVTMG 418
P++GHVRIR+K+QG+A+++G
Sbjct: 918 -PISGHVRIRSKTQGIALSLG 937
>sp|Q9MLJ7|CYB_CALJP Cytochrome b
Length = 372
Score = 32.3 bits (72), Expect = 0.85
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 441 FWAALIFSPIVTAIPWLLARILTW 370
FWAA + + ++TAIP+L A + TW
Sbjct: 132 FWAATVITNLLTAIPYLGATVTTW 155
>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 precursor
(Megalin) (Glycoprotein 330) (gp330)
Length = 4655
Score = 32.0 bits (71), Expect = 1.1
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 137 NEFEWENKVTVNTKIKDLHLYLNHITKNTNMRCLTPPEALEGECDYLC 280
N+++ ++ + T + +N + KN +C P E G C ++C
Sbjct: 2619 NKYDGSGQIAMTTNLLSQPRGINTVVKNQKQQCNNPCEQFNGGCSHIC 2666
>sp|Q9MLJ1|CYB_PARMU Cytochrome b
Length = 372
Score = 32.0 bits (71), Expect = 1.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 441 FWAALIFSPIVTAIPWLLARILTW 370
FWAA + + ++TAIP+L A + TW
Sbjct: 132 FWAATVITNLLTAIPYLGATLTTW 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,168,972
Number of Sequences: 369166
Number of extensions: 1561636
Number of successful extensions: 5360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5347
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)