Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_O08
(240 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45437|COPB_DROME Coatomer beta subunit (Beta-coat prote... 52 4e-07
sp|Q9JIF7|COPB_MOUSE Coatomer beta subunit (Beta-coat prote... 48 8e-06
sp|P23514|COPB_RAT Coatomer beta subunit (Beta-coat protein... 48 8e-06
sp|P53618|COPB_HUMAN Coatomer beta subunit (Beta-coat prote... 44 1e-04
sp|P41810|COPB_YEAST Coatomer beta subunit (Beta-coat prote... 39 0.005
sp|Q23924|COPB_DICDI Probable coatomer beta subunit (Beta-c... 39 0.005
sp|Q9UUF7|COPB_SCHPO Coatomer beta subunit (Beta-coat prote... 34 0.12
sp|Q9MLJ7|CYB_CALJP Cytochrome b 32 0.35
sp|Q9MLJ1|CYB_PARMU Cytochrome b 32 0.46
sp|Q9MLD6|CYB_CALMC Cytochrome b 31 0.78
>sp|P45437|COPB_DROME Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 964
Score = 52.0 bits (123), Expect = 4e-07
Identities = 25/39 (64%), Positives = 33/39 (84%), Gaps = 2/39 (5%)
Frame = +2
Query: 5 LEKPPGD--EPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 115
+EKP D VTGH+RIRAKSQGMA+++G+KIS++QKQ
Sbjct: 921 IEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQKQ 959
>sp|Q9JIF7|COPB_MOUSE Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 953
Score = 47.8 bits (112), Expect = 8e-06
Identities = 23/40 (57%), Positives = 32/40 (80%), Gaps = 3/40 (7%)
Frame = +2
Query: 5 LEKPPGDEP---VTGHVRIRAKSQGMAVTMGEKISAAQKQ 115
+EKP P VTGH+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 911 IEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKK 950
>sp|P23514|COPB_RAT Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 953
Score = 47.8 bits (112), Expect = 8e-06
Identities = 23/40 (57%), Positives = 32/40 (80%), Gaps = 3/40 (7%)
Frame = +2
Query: 5 LEKPPGDEP---VTGHVRIRAKSQGMAVTMGEKISAAQKQ 115
+EKP P VTGH+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 911 IEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKK 950
>sp|P53618|COPB_HUMAN Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 953
Score = 43.9 bits (102), Expect = 1e-04
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +2
Query: 23 DEPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 115
D VT H+RIRAKSQGMA+++G+KI+ +QK+
Sbjct: 920 DAAVTVHIRIRAKSQGMALSLGDKINLSQKE 950
>sp|P41810|COPB_YEAST Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 973
Score = 38.5 bits (88), Expect = 0.005
Identities = 15/38 (39%), Positives = 27/38 (71%)
Frame = +2
Query: 2 CLEKPPGDEPVTGHVRIRAKSQGMAVTMGEKISAAQKQ 115
C+EK V G+VRIR+K QG+A+++G++++ K+
Sbjct: 927 CIEKDSKTNDVIGYVRIRSKGQGLALSLGDRVALIAKK 964
>sp|Q23924|COPB_DICDI Probable coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 400
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +2
Query: 2 CLEKPPGDEPVTGHVRIRAKSQGMAVTMGEKI 97
C+EK D ++G++RIRAK Q +AVT+GEKI
Sbjct: 363 CIEKQ-ADGKISGYIRIRAKVQSIAVTLGEKI 393
>sp|Q9UUF7|COPB_SCHPO Coatomer beta subunit (Beta-coat protein) (Beta-COP)
Length = 940
Score = 33.9 bits (76), Expect = 0.12
Identities = 12/20 (60%), Positives = 20/20 (100%)
Frame = +2
Query: 29 PVTGHVRIRAKSQGMAVTMG 88
P++GHVRIR+K+QG+A+++G
Sbjct: 918 PISGHVRIRSKTQGIALSLG 937
>sp|Q9MLJ7|CYB_CALJP Cytochrome b
Length = 372
Score = 32.3 bits (72), Expect = 0.35
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 111 FWAALIFSPIVTAIPWLLARILTW 40
FWAA + + ++TAIP+L A + TW
Sbjct: 132 FWAATVITNLLTAIPYLGATVTTW 155
>sp|Q9MLJ1|CYB_PARMU Cytochrome b
Length = 372
Score = 32.0 bits (71), Expect = 0.46
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 111 FWAALIFSPIVTAIPWLLARILTW 40
FWAA + + ++TAIP+L A + TW
Sbjct: 132 FWAATVITNLLTAIPYLGATLTTW 155
>sp|Q9MLD6|CYB_CALMC Cytochrome b
Length = 371
Score = 31.2 bits (69), Expect = 0.78
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 111 FWAALIFSPIVTAIPWLLARILTW 40
FWAA + + ++TAIP+L I TW
Sbjct: 132 FWAATVITNLLTAIPYLGTTITTW 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,773,222
Number of Sequences: 369166
Number of extensions: 472434
Number of successful extensions: 2697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2695
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)