Planaria EST Database

DrC_00987

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00987
         (290 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09623|DLDH_PIG  Dihydrolipoyl dehydrogenase, mitochondri...   105   4e-23
sp|Q60HG3|DLDH_MACFA  Dihydrolipoyl dehydrogenase, mitochond...   102   2e-22
sp|P49819|DLDH_CANFA  Dihydrolipoyl dehydrogenase, mitochond...   102   2e-22
sp|P09622|DLDH_HUMAN  Dihydrolipoyl dehydrogenase, mitochond...   102   2e-22
sp|O08749|DLDH_MOUSE  Dihydrolipoyl dehydrogenase, mitochond...   102   4e-22
sp|O18480|DLDH_MANSE  Dihydrolipoyl dehydrogenase (Dihydroli...    98   7e-21
sp|O00087|DLDH_SCHPO  Dihydrolipoyl dehydrogenase, mitochond...    93   2e-19
sp|P09624|DLDH_YEAST  Dihydrolipoyl dehydrogenase, mitochond...    88   7e-18
sp|P90597|DLDH_TRYCR  Dihydrolipoyl dehydrogenase (Dihydroli...    77   2e-14
sp|Q04933|DLDH_TRYBB  Dihydrolipoyl dehydrogenase (Dihydroli...    75   4e-14

>sp|P09623|DLDH_PIG Dihydrolipoyl dehydrogenase, mitochondrial precursor
           (Dihydrolipoamide dehydrogenase)
          Length = 509

 Score =  105 bits (261), Expect = 4e-23
 Identities = 50/61 (81%), Positives = 57/61 (93%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           R+LGA+I+G  AGE+INEAALA+EYGASCEDIARVCHAHPT++EAFREANLAA  GKAIN
Sbjct: 449 RVLGAHIIGPGAGEMINEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKAIN 508

Query: 181 F 183
           F
Sbjct: 509 F 509

>sp|Q60HG3|DLDH_MACFA Dihydrolipoyl dehydrogenase, mitochondrial precursor
           (Dihydrolipoamide dehydrogenase)
          Length = 509

 Score =  102 bits (255), Expect = 2e-22
 Identities = 48/61 (78%), Positives = 57/61 (93%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           R+LGA+I+G  AGE++NEAALA+EYGASCEDIARVCHAHPT++EAFREANLAA  GK+IN
Sbjct: 449 RVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSIN 508

Query: 181 F 183
           F
Sbjct: 509 F 509

>sp|P49819|DLDH_CANFA Dihydrolipoyl dehydrogenase, mitochondrial precursor
           (Dihydrolipoamide dehydrogenase)
          Length = 509

 Score =  102 bits (255), Expect = 2e-22
 Identities = 48/61 (78%), Positives = 57/61 (93%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           R+LGA+I+G  AGE++NEAALA+EYGASCEDIARVCHAHPT++EAFREANLAA  GK+IN
Sbjct: 449 RVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSIN 508

Query: 181 F 183
           F
Sbjct: 509 F 509

>sp|P09622|DLDH_HUMAN Dihydrolipoyl dehydrogenase, mitochondrial precursor
           (Dihydrolipoamide dehydrogenase) (Glycine cleavage
           system L protein)
          Length = 509

 Score =  102 bits (255), Expect = 2e-22
 Identities = 48/61 (78%), Positives = 57/61 (93%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           R+LGA+I+G  AGE++NEAALA+EYGASCEDIARVCHAHPT++EAFREANLAA  GK+IN
Sbjct: 449 RVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSIN 508

Query: 181 F 183
           F
Sbjct: 509 F 509

>sp|O08749|DLDH_MOUSE Dihydrolipoyl dehydrogenase, mitochondrial precursor
           (Dihydrolipoamide dehydrogenase)
          Length = 509

 Score =  102 bits (253), Expect = 4e-22
 Identities = 48/61 (78%), Positives = 56/61 (91%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           R+LGA+I+G  AGE++NEAALA+EYGASCEDIARVCHAHPT++EAFREANLAA  GK IN
Sbjct: 449 RVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAAAFGKPIN 508

Query: 181 F 183
           F
Sbjct: 509 F 509

>sp|O18480|DLDH_MANSE Dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) (E3)
          Length = 497

 Score = 97.8 bits (242), Expect = 7e-21
 Identities = 45/60 (75%), Positives = 50/60 (83%)
 Frame = +1

Query: 4   LLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAINF 183
           +LG +I+G   GELINEA LA EYGA+ ED+ARVCHAHPT AEA REANLAAYCGK INF
Sbjct: 438 ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAAYCGKPINF 497

>sp|O00087|DLDH_SCHPO Dihydrolipoyl dehydrogenase, mitochondrial precursor (DLDH)
           (Dihydrolipoamide dehydrogenase)
          Length = 511

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 41/61 (67%), Positives = 54/61 (88%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           RLLG +++G +AGELI EA LA+EYGAS ED+ARVCHAHPT++EA +EA +AA+CGK+I+
Sbjct: 451 RLLGVHMIGPMAGELIGEATLALEYGASAEDVARVCHAHPTLSEATKEAMMAAWCGKSIH 510

Query: 181 F 183
           F
Sbjct: 511 F 511

>sp|P09624|DLDH_YEAST Dihydrolipoyl dehydrogenase, mitochondrial precursor
           (Dihydrolipoamide dehydrogenase)
          Length = 499

 Score = 87.8 bits (216), Expect = 7e-18
 Identities = 42/60 (70%), Positives = 53/60 (88%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           R+LGA+I+G  AGE+I EA LA+EYGAS ED+ARVCHAHPT++EAF+EAN+AAY  KAI+
Sbjct: 440 RILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAY-DKAIH 498

>sp|P90597|DLDH_TRYCR Dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase)
          Length = 477

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           R+LG +IV + AGELI EA LAMEYGAS ED+ R CHAHPT++EA +EA + A   K IN
Sbjct: 418 RILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACM-ALVAKTIN 476

Query: 181 F 183
           F
Sbjct: 477 F 477

>sp|Q04933|DLDH_TRYBB Dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase)
          Length = 479

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = +1

Query: 1   RLLGAYIVGSVAGELINEAALAMEYGASCEDIARVCHAHPTVAEAFREANLAAYCGKAIN 180
           R+LG +IV S AGELI  A LAMEYGAS ED+ R CHAHPT++EA +EA +A +  K IN
Sbjct: 420 RILGVHIVCSAAGELIAGALLAMEYGASSEDVGRTCHAHPTMSEAVKEACMACF-AKTIN 478

Query: 181 F 183
           F
Sbjct: 479 F 479

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,655,546
Number of Sequences: 369166
Number of extensions: 379172
Number of successful extensions: 776
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00987

  1. Dr_sW_024_P05
  2. Dr_sW_012_B17