Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_B17
(197 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O18480|DLDH_MANSE Dihydrolipoyl dehydrogenase (Dihydroli... 64 1e-10
sp|P09623|DLDH_PIG Dihydrolipoyl dehydrogenase, mitochondri... 60 1e-09
sp|Q60HG3|DLDH_MACFA Dihydrolipoyl dehydrogenase, mitochond... 59 3e-09
sp|P49819|DLDH_CANFA Dihydrolipoyl dehydrogenase, mitochond... 59 3e-09
sp|P09622|DLDH_HUMAN Dihydrolipoyl dehydrogenase, mitochond... 59 3e-09
sp|O08749|DLDH_MOUSE Dihydrolipoyl dehydrogenase, mitochond... 59 5e-09
sp|O00087|DLDH_SCHPO Dihydrolipoyl dehydrogenase, mitochond... 55 7e-08
sp|P09624|DLDH_YEAST Dihydrolipoyl dehydrogenase, mitochond... 51 1e-06
sp|P31023|DLDH_PEA Dihydrolipoyl dehydrogenase, mitochondri... 44 1e-04
sp|Q04933|DLDH_TRYBB Dihydrolipoyl dehydrogenase (Dihydroli... 42 6e-04
>sp|O18480|DLDH_MANSE Dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) (E3)
Length = 497
Score = 63.9 bits (154), Expect = 1e-10
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAINF 96
ED+ARVCHAHPT AEA REANLAAYCGK INF
Sbjct: 466 EDVARVCHAHPTCAEALREANLAAYCGKPINF 497
>sp|P09623|DLDH_PIG Dihydrolipoyl dehydrogenase, mitochondrial precursor
(Dihydrolipoamide dehydrogenase)
Length = 509
Score = 60.5 bits (145), Expect = 1e-09
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAINF 96
EDIARVCHAHPT++EAFREANLAA GKAINF
Sbjct: 478 EDIARVCHAHPTLSEAFREANLAASFGKAINF 509
>sp|Q60HG3|DLDH_MACFA Dihydrolipoyl dehydrogenase, mitochondrial precursor
(Dihydrolipoamide dehydrogenase)
Length = 509
Score = 59.3 bits (142), Expect = 3e-09
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAINF 96
EDIARVCHAHPT++EAFREANLAA GK+INF
Sbjct: 478 EDIARVCHAHPTLSEAFREANLAASFGKSINF 509
>sp|P49819|DLDH_CANFA Dihydrolipoyl dehydrogenase, mitochondrial precursor
(Dihydrolipoamide dehydrogenase)
Length = 509
Score = 59.3 bits (142), Expect = 3e-09
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAINF 96
EDIARVCHAHPT++EAFREANLAA GK+INF
Sbjct: 478 EDIARVCHAHPTLSEAFREANLAASFGKSINF 509
>sp|P09622|DLDH_HUMAN Dihydrolipoyl dehydrogenase, mitochondrial precursor
(Dihydrolipoamide dehydrogenase) (Glycine cleavage
system L protein)
Length = 509
Score = 59.3 bits (142), Expect = 3e-09
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAINF 96
EDIARVCHAHPT++EAFREANLAA GK+INF
Sbjct: 478 EDIARVCHAHPTLSEAFREANLAASFGKSINF 509
>sp|O08749|DLDH_MOUSE Dihydrolipoyl dehydrogenase, mitochondrial precursor
(Dihydrolipoamide dehydrogenase)
Length = 509
Score = 58.5 bits (140), Expect = 5e-09
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAINF 96
EDIARVCHAHPT++EAFREANLAA GK INF
Sbjct: 478 EDIARVCHAHPTLSEAFREANLAAAFGKPINF 509
>sp|O00087|DLDH_SCHPO Dihydrolipoyl dehydrogenase, mitochondrial precursor (DLDH)
(Dihydrolipoamide dehydrogenase)
Length = 511
Score = 54.7 bits (130), Expect = 7e-08
Identities = 22/32 (68%), Positives = 30/32 (93%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAINF 96
ED+ARVCHAHPT++EA +EA +AA+CGK+I+F
Sbjct: 480 EDVARVCHAHPTLSEATKEAMMAAWCGKSIHF 511
>sp|P09624|DLDH_YEAST Dihydrolipoyl dehydrogenase, mitochondrial precursor
(Dihydrolipoamide dehydrogenase)
Length = 499
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/31 (74%), Positives = 29/31 (93%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAIN 93
ED+ARVCHAHPT++EAF+EAN+AAY KAI+
Sbjct: 469 EDVARVCHAHPTLSEAFKEANMAAY-DKAIH 498
>sp|P31023|DLDH_PEA Dihydrolipoyl dehydrogenase, mitochondrial precursor (Glycine
cleavage system L protein) (Dihydrolipoamide
dehydrogenase)
Length = 501
Score = 43.9 bits (102), Expect = 1e-04
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAY 75
EDIARVCHAHPT++EA +EA +A Y
Sbjct: 471 EDIARVCHAHPTMSEAIKEAAMATY 495
>sp|Q04933|DLDH_TRYBB Dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase)
Length = 479
Score = 41.6 bits (96), Expect = 6e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +1
Query: 1 EDIARVCHAHPTVAEAFREANLAAYCGKAINF 96
ED+ R CHAHPT++EA +EA +A + K INF
Sbjct: 449 EDVGRTCHAHPTMSEAVKEACMACF-AKTINF 479
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,942,137
Number of Sequences: 369166
Number of extensions: 214009
Number of successful extensions: 312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)