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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00984
         (1085 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04190|BLA2_BACCE  Beta-lactamase II precursor (Penicilli...    60   8e-09
sp|P14488|BLAB_BACCE  Beta-lactamase II precursor (Penicilli...    59   2e-08
sp|Q08889|GLO2_BUCAP  Probable hydroxyacylglutathione hydrol...    53   2e-06
sp|P10425|BLA2_BAC17  Beta-lactamase II precursor (Penicilli...    53   2e-06
sp|P25910|BLAB_BACFR  Beta-lactamase type II precursor (Peni...    51   7e-06
sp|P57336|GLO2_BUCAI  Probable hydroxyacylglutathione hydrol...    49   3e-05
sp|P54435|YRKH_BACSU  Hypothetical protein yrkH                    48   6e-05
sp|Q89AN4|GLO2_BUCBP  Probable hydroxyacylglutathione hydrol...    48   6e-05
sp|P0AC84|GLO2_ECOLI  Probable hydroxyacylglutathione hydrol...    47   7e-05
sp|P54553|YQJP_BACSU  Hypothetical protein yqjP                    47   9e-05

>sp|P04190|BLA2_BACCE Beta-lactamase II precursor (Penicillinase) (Cephalosporinase)
          Length = 257

 Score = 60.5 bits (145), Expect = 8e-09
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
 Frame = +3

Query: 51  DKTMHK*NIMLPSIPKISQIVPGITRILGMNPSAMTLQGTNSYLIGTNTSKLLIDTSNLH 230
           +KT+ K      SI ++++ V   T +   N  A+    +N  ++ T+   +L+D+S   
Sbjct: 35  EKTVIKNETGTISISQLNKNVWVHTELGSFNGEAVP---SNGLVLNTSKGLVLVDSS--- 88

Query: 231 QNAYIDNLRQYLIESCENS---TISDIIVTHWHPDHIGGVSDI-------FDLAKSLNWK 380
              + D L + LIE  E      ++D+I+TH H D IGG+  +          A +    
Sbjct: 89  ---WDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELA 145

Query: 381 KPNVFKYPSLDHSSECNILKSDEVISLSKYGMGTLKVLYT-PGHTDDHICLLLQPENILF 557
           K N ++ P  D  +  N+          K+G   ++  Y   GHT+D+I + L   NIL 
Sbjct: 146 KKNGYEEPLGDLQTVTNL----------KFGNMKVETFYPGKGHTEDNIVVWLPQYNILV 195

Query: 558 SGDLILGNGSTTFENLT-LYMNSLKT-IESI---GNSLSMILPGHG 680
            G L+    +    N+   Y+N   T IE++     +++ ++PGHG
Sbjct: 196 GGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHG 241

>sp|P14488|BLAB_BACCE Beta-lactamase II precursor (Penicillinase) (Cephalosporinase)
          Length = 256

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 17/188 (9%)
 Frame = +3

Query: 168 TNSYLIGTNTSKLLIDTSNLHQNAYIDNLRQYLIESCENS---TISDIIVTHWHPDHIGG 338
           +N  ++ T+   +L+D+S      + D L + LIE  E      ++D+I+TH H D IGG
Sbjct: 70  SNGLVLNTSKGLVLVDSS------WDDKLTKELIEMVEKKFKKRVTDVIITHAHADRIGG 123

Query: 339 VSDI-------FDLAKSLNWKKPNVFKYPSLDHSSECNILKSDEVISLSKYGMGTLKVLY 497
           +  +          A +    K N ++ P  D  S  N+          K+G   ++  Y
Sbjct: 124 MKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQSVTNL----------KFGNMKVETFY 173

Query: 498 T-PGHTDDHICLLLQPENILFSGDLILGNGSTTFENLT-LYMNSLKT-IESI----GNSL 656
              GHT+D+I + L    IL  G L+    S    N+   Y+N   T IE++    GN +
Sbjct: 174 PGKGHTEDNIVVWLPQYQILAGGCLVKSASSKDLGNVADAYVNEWSTSIENVLKRYGN-I 232

Query: 657 SMILPGHG 680
           ++++PGHG
Sbjct: 233 NLVVPGHG 240

>sp|Q08889|GLO2_BUCAP Probable hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II)
          Length = 250

 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 13/195 (6%)
 Frame = +3

Query: 279 ENSTISDIIVTHWHPDHIGGVSDIFDLAKSLNWKKPNVFKY-PSLDHSSECN-ILKSDEV 452
           +N  +  I++TH H DH+GGV +I         + PNV  + P    +   N I+K  +V
Sbjct: 42  KNWKLIAILLTHNHIDHVGGVEEIIR-------RYPNVTVFGPEETKTRNVNKIVKQGDV 94

Query: 453 ISLSKYGMGTLKVLYTPGHTDDHICLLLQPENILFSGDLILGNG-STTFENLTL------ 611
           I L K     + V  TPGHT  H+   L+P   +F GD +   G    F+N         
Sbjct: 95  IKLLK---SEIHVFLTPGHTLGHVSYYLKP--YIFCGDTLFSGGCGRVFKNKFFDMYQSI 149

Query: 612 -YMNSL--KTIESIGNSLSMILPGHGVEIDQPVSKIKEYLQHRQERIKQVFNALEIS-QW 779
            ++ SL  KTI    +  ++      + I     KIK+Y +  ++ I Q   +L +S + 
Sbjct: 150 NFIKSLPKKTILCCSHEYTLSNLNFAMSILPFDKKIKKYYKKIKKHISQNKTSLPVSLET 209

Query: 780 QSEIEILSKVYSKDI 824
           + +I I  +   K I
Sbjct: 210 EKKINIFLRTNEKTI 224

>sp|P10425|BLA2_BAC17 Beta-lactamase II precursor (Penicillinase)
          Length = 257

 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
 Frame = +3

Query: 168 TNSYLIGTNTSKLLIDTSNLHQNAYIDNLRQYLIESCENS---TISDIIVTHWHPDHIGG 338
           +N  ++ T+   +L+D+S      + + L + LIE  E      ++D+I+TH H D IGG
Sbjct: 71  SNGLVLNTSKGLVLVDSS------WDNKLTKELIEMVEKKFQKRVTDVIITHAHADRIGG 124

Query: 339 VSDI-------FDLAKSLNWKKPNVFKYPSLDHSSECNILKSDEVISLSKYGMGTLKVLY 497
           ++ +          A +    K + ++ P  D  +  N+          K+G   ++  Y
Sbjct: 125 ITALKERGIKAHSTALTAELAKKSGYEEPLGDLQTVTNL----------KFGNTKVETFY 174

Query: 498 T-PGHTDDHICLLLQPENILFSGDLI-------LGNGSTTFENLTLYMNSLKTIESIGNS 653
              GHT+D+I + L    IL  G L+       LGN +  + N   +  S++ +     +
Sbjct: 175 PGKGHTEDNIVVWLPQYQILAGGCLVKSAEAKNLGNVADAYVN--EWSTSIENMLKRYRN 232

Query: 654 LSMILPGHG 680
           +++++PGHG
Sbjct: 233 INLVVPGHG 241

>sp|P25910|BLAB_BACFR Beta-lactamase type II precursor (Penicillinase) (Cephalosporinase)
           (Imipenem-cefoxitin hydrolyzing enzyme)
          Length = 249

 Score = 50.8 bits (120), Expect = 7e-06
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
 Frame = +3

Query: 168 TNSYLIGTNTSKLLIDTSNLHQNAYIDNLRQYLIESCENSTISDIIVTHWHPDHIGGVSD 347
           +N  ++  N    L+DT     +A  + L  ++ +S  ++ ++  I  HWH D IGG+  
Sbjct: 54  SNGMIVINNHQAALLDTPI--NDAQTEMLVNWVTDSL-HAKVTTFIPNHWHGDCIGGLGY 110

Query: 348 I-------------FDLAKSLNWKKPNVFKYPSLDHSSECNILKSDEVISLSKYGMGTLK 488
           +              DLAK      P        +H    ++  S + + L  Y +G   
Sbjct: 111 LQRKGVQSYANQMTIDLAKEKGLPVP--------EHGFTDSLTVSLDGMPLQCYYLGG-- 160

Query: 489 VLYTPGHTDDHICLLLQPENILFSGDLILGNGSTTFENL-----TLYMNSLKTIESIGNS 653
                GH  D+I + L  ENILF G ++  N +T+  N+     T +  +L  +++   S
Sbjct: 161 -----GHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPS 215

Query: 654 LSMILPGHG 680
              ++PGHG
Sbjct: 216 ARYVVPGHG 224

>sp|P57336|GLO2_BUCAI Probable hydroxyacylglutathione hydrolase (Glyoxalase II) (GLX II)
          Length = 251

 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 4/162 (2%)
 Frame = +3

Query: 180 LIGTNTSKLLIDTSNLHQNAYIDNLRQYLIESCENST--ISDIIVTHWHPDHIGGVSDIF 353
           L+ T+ S ++ID            L + +I+  E     +  I++TH H DH GG   I 
Sbjct: 17  LLNTSGSCIIIDPG----------LSEPIIQEIERKKWRLRAILLTHNHIDHTGGTRKII 66

Query: 354 DLAKSLNWKKPNVFKYPSLDHSSECNILKSDEVISLSKYGMGTLKVLYTPGHTDDHICLL 533
           +    ++   P   +     H     +   D +I L K       V +TPGHT  H+   
Sbjct: 67  EYFPKISVFGPKETR----QHGVNKIVSHGDRIILLDKI----FYVFFTPGHTSGHVSYY 118

Query: 534 LQPENILFSGDLILGNG-STTFENLTLYM-NSLKTIESIGNS 653
            QP   +F GD +   G    F+N  L M  S+K I S+ +S
Sbjct: 119 SQP--YIFCGDTLFSAGCGRVFKNKHLEMYRSIKIISSLPDS 158

>sp|P54435|YRKH_BACSU Hypothetical protein yrkH
          Length = 295

 Score = 47.8 bits (112), Expect = 6e-05
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 9/187 (4%)
 Frame = +3

Query: 162 QGTNSYLIGTNTSKLLIDTSNLHQNAYIDNLRQYLIESCENSTISDIIVTHWHPDHIGGV 341
           +G  SY++ +N    +ID + +  N +ID  +       + +TI+ +  TH H DHI G 
Sbjct: 49  KGCLSYMVISNGEAAIIDATRM-VNFFIDFAKG------KGATITHVFDTHLHADHISGG 101

Query: 342 SDIFDLAKSLNWKKPNVFKYPSLDHSSECNILKSDEVISLSKYGMGTLKV--LYTPGHTD 515
             I +  K+  W  P   +    D+     + + +++I     G  T+K+  +Y+PGHT 
Sbjct: 102 RVIAEKTKATYWLPPKDAEEVEFDYQP---LEEGNDII----IGNTTIKIQPIYSPGHTI 154

Query: 516 DHICLLLQPENILFSGDLI----LGNGSTTFENLTLYMNSLKTIESIGNSLS---MILPG 674
                ++  +  L SGD++    +G             +  KT+ S   +LS   ++LP 
Sbjct: 155 GSTSFIVD-DQYLLSGDILFIDSIGRPDLAGMAEDWVGDLRKTLYSRYKALSKDLIVLPA 213

Query: 675 HGVEIDQ 695
           H + ID+
Sbjct: 214 HFMIIDE 220

>sp|Q89AN4|GLO2_BUCBP Probable hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II)
          Length = 249

 Score = 47.8 bits (112), Expect = 6e-05
 Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 4/195 (2%)
 Frame = +3

Query: 300 IIVTHWHPDHIGGVSDIFDLAKSLNWKKPNVFKYPSLD--HSSECNILKSDEVISLSKYG 473
           I++TH H DHI GV       K+L +K P +  Y  L+       N++ +   I +    
Sbjct: 49  ILLTHNHLDHIQGV-------KNLLYKYPEISIYGPLETQFCGTKNLIDNRNTIEILN-- 99

Query: 474 MGTLKVLYTPGHTDDHICLLLQPENILFSGDLILGNGSTTFEN--LTLYMNSLKTIESIG 647
                ++ TPGHT+ H      P   LF GD I   G    +N  +    NSL+TI  + 
Sbjct: 100 -TKFYIIPTPGHTNGHTAYYCPP--FLFCGDSIFSGGCGRVKNGMMIKMYNSLRTISKLP 156

Query: 648 NSLSMILPGHGVEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSKDIL 827
           N  ++I   H  E  +   +  + +  +   I   +N ++ S+ Q  +    K+  K   
Sbjct: 157 ND-TLIYCSH--EYTRSNLEFFKKIFPKNLNILNYYNNIKKSKTQCTLPSTLKIEKK--- 210

Query: 828 ANPVLFMGALKNQHQ 872
            NP L +     +HQ
Sbjct: 211 INPFLQLNNTNLRHQ 225

>sp|P0AC84|GLO2_ECOLI Probable hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II)
 sp|P0AC85|GLO2_ECO57 Probable hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II)
          Length = 251

 Score = 47.4 bits (111), Expect = 7e-05
 Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 23/202 (11%)
 Frame = +3

Query: 300 IIVTHWHPDHIGGVSDIFDLAKSLNWKKPNVFKY--PSLDHSSECNILKSDEVISLSKYG 473
           I +TH H DH+GGV ++ +       K P +  Y            ++K  E   +  + 
Sbjct: 49  IFLTHHHHDHVGGVKELVE-------KFPQIVVYGPQETQDKGTTQVVKDGETAFVLGH- 100

Query: 474 MGTLKVLYTPGHTDDHICLLLQPENILFSGDLILGNG-STTFENLTLYM-NSLKTIESIG 647
                V+ TPGHT  HIC   +P   LF GD +   G    FE     M  SLK + ++ 
Sbjct: 101 --EFSVIATPGHTLGHICYFSKP--YLFCGDTLFSGGCGRLFEGTASQMYQSLKKLSALP 156

Query: 648 NSLSM----------------ILPGHGVEIDQPVSKIKEYLQHRQERIKQVF-NALEISQ 776
           +   +                ILP H + I+    K+KE     Q  +  +  N  +I+ 
Sbjct: 157 DDTLVCCAHEYTLSNMKFALSILP-HDLSINDYYRKVKELRAKNQITLPVILKNERQINV 215

Query: 777 W--QSEIEILSKVYSKDILANP 836
           +    +I++++ +  + +L  P
Sbjct: 216 FLRTEDIDLINVINEETLLQQP 237

>sp|P54553|YQJP_BACSU Hypothetical protein yqjP
          Length = 319

 Score = 47.0 bits (110), Expect = 9e-05
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 49/229 (21%)
 Frame = +3

Query: 285 STISDIIVTHWHPDHIGGVSDIFD--------------LAKS---LNWKKPNVFKY-PSL 410
           S I  +++TH H DH  G+ D+F               ++++   ++W+K    K  P L
Sbjct: 58  SDIEQVVLTHHHADH-AGLLDVFSDEIEVIGHTFNEPYISQNQAFMDWQKRFFQKLLPEL 116

Query: 411 ----DHSSECNILKSDEVISLSKY-------GMGT-----LKVLYTPGHTDDHICLLLQP 542
               D      +++S    S ++        GMG        VL  PGH + HI L  + 
Sbjct: 117 GVPFDTGKAEKLIRSAYAFSCTRSLTKSIREGMGIDGLEGWSVLEMPGHAESHIVLFHEK 176

Query: 543 ENILFSGDLILGN------------GSTTFENLTLYMNSLKTIESIGNSLSMILPGHG-- 680
              +  GDL+L N            G    + L  Y  SL+ +  +  ++  + PGHG  
Sbjct: 177 SGRMLGGDLLLANSSSNPILEAPKAGDVRSKPLVDYQRSLRRLSQLDPTI--VFPGHGEP 234

Query: 681 -VEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSKDI 824
              +   + K  +  ++R E ++++ +   ++ +Q   ++   VY K++
Sbjct: 235 ITSVQALIEKRFDKQRNRTEDVRRMLDEKPMTAFQVCQQLFPAVYEKEL 283

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,307,057
Number of Sequences: 369166
Number of extensions: 2300051
Number of successful extensions: 6055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6032
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 11868500340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_024_N12
2. Dr_sW_026_N06