Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_N06
(559 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91ZU6|BPA1_MOUSE Bullous pemphigoid antigen 1, isoforms... 33 0.48
sp|Q91ZU8|BPAEA_MOUSE Bullous pemphigoid antigen 1, isoform... 33 0.48
sp|P11682|APOB_CHICK Apolipoprotein B 32 1.1
sp|Q8EWX0|RPOC_MYCPE DNA-directed RNA polymerase beta' chai... 32 1.1
sp|P19818|VAT_CAMVP Aphid transmission protein (Protein 2) 32 1.1
sp|P03549|VAT_CAMVC Aphid transmission protein (Protein 2) 32 1.4
sp|Q00965|VAT_CAMVN Aphid transmission protein (Protein 2) 32 1.4
sp|P25910|BLAB_BACFR Beta-lactamase type II precursor (Peni... 31 2.4
sp|P16924|P4HA_CHICK Prolyl 4-hydroxylase alpha subunit (4-... 30 4.0
sp|P03548|VAT_CAMVS Aphid transmission protein (Protein 2) 30 4.0
>sp|Q91ZU6|BPA1_MOUSE Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA) (Hemidesmosomal
plaque protein) (Dystonia musculorum protein) (Dystonin)
Length = 7389
Score = 33.1 bits (74), Expect = 0.48
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 125 SLSMILPG-HGVEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSK 292
S+ +LPG H + S+++++L+ QE Q+F+ +ISQ + E+ + K Y +
Sbjct: 995 SIKTMLPGEHQQVLSNLQSRLEDFLEDSQE--SQIFSGSDISQLEKEVSVCRKYYQE 1049
>sp|Q91ZU8|BPAEA_MOUSE Bullous pemphigoid antigen 1, isoform 5 (BPA) (Hemidesmosomal
plaque protein) (Dystonia musculorum protein) (Dystonin)
Length = 2611
Score = 33.1 bits (74), Expect = 0.48
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 125 SLSMILPG-HGVEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSK 292
S+ +LPG H + S+++++L+ QE Q+F+ +ISQ + E+ + K Y +
Sbjct: 641 SIKTMLPGEHQQVLSNLQSRLEDFLEDSQE--SQIFSGSDISQLEKEVSVCRKYYQE 695
>sp|P11682|APOB_CHICK Apolipoprotein B
Length = 433
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/96 (26%), Positives = 44/96 (45%)
Frame = +2
Query: 5 LLQPENILFSGDLILGNGSTTFENLTLYMNSLKTIESIGNSLSMILPGHGVEIDQPVSKI 184
L+ E + D+ L F+ L ++ L+ + IL G V + +I
Sbjct: 15 LMTTEKAAKTADICLSKLQEYFDALIAAISELEVRVPASET---ILRGRNV-----LDQI 66
Query: 185 KEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSK 292
KE L+H QE+I+Q F L+ + + ++ L +V K
Sbjct: 67 KEMLKHLQEKIRQTFVTLQEADFAGKLNRLKQVVQK 102
>sp|Q8EWX0|RPOC_MYCPE DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1288
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 209 ERIKQVFNALEISQWQSEI--EILSKVYS-KDILANPVLFMGALKNQHQALEY 358
ER+KQ+F+ + QW+ I EI KV S K NP + + +KN +++ Y
Sbjct: 1042 ERLKQLFDIIPPKQWEKSIISEIEGKVSSIKASPDNPNILVVTIKNSKESINY 1094
>sp|P19818|VAT_CAMVP Aphid transmission protein (Protein 2)
Length = 159
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +2
Query: 113 SIGNSLSMILPGHGVEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSK 292
S+ N+ I GV+ + +IK L+ + RIK + NA++ + + E L+K K
Sbjct: 82 SVFNTAKTIFKSGGVDYSSQLKEIKSLLEAQNTRIKNLENAIQSLDNKIQPEPLTKEEVK 141
Query: 293 DILANPVLFMGALKN 337
++ + ALKN
Sbjct: 142 ELKESINSIKEALKN 156
>sp|P03549|VAT_CAMVC Aphid transmission protein (Protein 2)
Length = 159
Score = 31.6 bits (70), Expect = 1.4
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 113 SIGNSLSMILPGHGVEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSK 292
S+ N+ I GV+ + ++K L+ + RIK + NA++ + E E L+K K
Sbjct: 82 SVFNTAKNIFKSRGVDYSSQLKEVKSLLEAQNTRIKNLENAIQSLDNKIEPEPLTKEEVK 141
Query: 293 DILANPVLFMGALKN 337
++ + LKN
Sbjct: 142 ELKESINSIKEGLKN 156
>sp|Q00965|VAT_CAMVN Aphid transmission protein (Protein 2)
Length = 159
Score = 31.6 bits (70), Expect = 1.4
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +2
Query: 113 SIGNSLSMILPGHGVEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSK 292
S+ N+ I GV+ + +IK L+ + RIK + NA++ + E E L+K K
Sbjct: 82 SVFNTAKTIFKSGGVDYSSQLKEIKSLLEAQNTRIKSLENAIQSLDNKIEPEPLTKEEVK 141
Query: 293 DILANPVLFMGALKN 337
++ + LKN
Sbjct: 142 ELKESINSIKEGLKN 156
>sp|P25910|BLAB_BACFR Beta-lactamase type II precursor (Penicillinase) (Cephalosporinase)
(Imipenem-cefoxitin hydrolyzing enzyme)
Length = 249
Score = 30.8 bits (68), Expect = 2.4
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +2
Query: 8 LQPENILFSGDLILGNGSTTFENL-----TLYMNSLKTIESIGNSLSMILPGHG 154
L ENILF G ++ N +T+ N+ T + +L +++ S ++PGHG
Sbjct: 171 LPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHG 224
>sp|P16924|P4HA_CHICK Prolyl 4-hydroxylase alpha subunit (4-PH alpha)
(Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha
subunit)
Length = 516
Score = 30.0 bits (66), Expect = 4.0
Identities = 21/83 (25%), Positives = 42/83 (50%)
Frame = +2
Query: 113 SIGNSLSMILPGHGVEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSK 292
SIG+ +I E D +SK+K+Y++ + +++Q I +W +++ L+ +K
Sbjct: 7 SIGHMTDLI----NTEKDLVISKLKDYIKAEESKLEQ------IKKWAEKLDKLTDTATK 56
Query: 293 DILANPVLFMGALKNQHQALEYL 361
D P F+G N + ++ L
Sbjct: 57 D----PEGFLGHPANAFKLMKRL 75
>sp|P03548|VAT_CAMVS Aphid transmission protein (Protein 2)
Length = 159
Score = 30.0 bits (66), Expect = 4.0
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 113 SIGNSLSMILPGHGVEIDQPVSKIKEYLQHRQERIKQVFNALEISQWQSEIEILSKVYSK 292
S+ N+ I GV+ + +IK L+ + RIK + A++ + + E E L+K K
Sbjct: 82 SVFNTAKTIFKSGGVDYSSQLKEIKSLLEAQNTRIKSLEKAIQSLENKIEPEPLTKEEVK 141
Query: 293 DILANPVLFMGALKN 337
++ + LKN
Sbjct: 142 ELKESINSIKEGLKN 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,804,613
Number of Sequences: 369166
Number of extensions: 1078232
Number of successful extensions: 3044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3044
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)