Planaria EST Database

DrC_00980

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00980
         (919 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CCG1|CN140_MOUSE  Protein C14orf140 homolog                   77   9e-14
sp|Q6AYP4|CN140_RAT  Protein C14orf140 homolog                     77   9e-14
sp|Q9BGW4|CN140_MACFA  Protein C14orf140 homolog                   70   1e-11
sp|Q14585|ZN345_HUMAN  Zinc finger protein 345 (Zinc finger ...    33   0.86 
sp|Q8GVE8|CAPP4_ARATH  Phosphoenolpyruvate carboxylase 4 (PE...    33   1.5  
sp|Q02398|UVSH_EMENI  Postreplication repair protein uvsH/nuvA     32   2.5  
sp|Q66S41|MBL2_preOB  Mannose-binding protein C precursor (M...    32   2.5  
sp|Q9W539|HR4_DROME  Hormone receptor 4 (dHR4)                     31   4.3  
sp|Q66S37|MBL2_CERAE  Mannose-binding protein C precursor (M...    31   5.6  
sp|Q66S45|MBL2_preCR  Mannose-binding protein C precursor (M...    30   7.3  

>sp|Q8CCG1|CN140_MOUSE Protein C14orf140 homolog
          Length = 527

 Score = 76.6 bits (187), Expect = 9e-14
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
 Frame = +2

Query: 29  ELIPCKCCGRNFRPDVLVKHEPICVKTSRKQRKVFDSGKQRADGSDIPKNKTLKPGEIPK 208
           EL  C  CGR+F    L +H  +C K    +RKVFDS + RA G+++ +    +    P 
Sbjct: 378 ELAKCSHCGRSFLSLRLQRHSTVCGKMQGSKRKVFDSSRARAKGTELEQYLNWRG---PA 434

Query: 209 TDAKLAAAEARTKQWRQKHDQLIESFKAARNYNIAKRTGGXXXXXXXXVV--DTSLVECP 382
           T         R   WRQKH+  I + + AR        GG        +   +   V+CP
Sbjct: 435 TAKAETPPPPRKSTWRQKHESFIRTLRHARQVQQVIARGGNPSDLPSILPADNPDYVQCP 494

Query: 383 YCHRRFNEDACNRHMPFCK 439
           +C R F      RH+P CK
Sbjct: 495 HCSRHFAPKVAERHIPKCK 513

>sp|Q6AYP4|CN140_RAT Protein C14orf140 homolog
          Length = 525

 Score = 76.6 bits (187), Expect = 9e-14
 Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
 Frame = +2

Query: 29  ELIPCKCCGRNFRPDVLVKHEPICVKTSRKQRKVFDSGKQRADGSDIPKNKTLKPGEIPK 208
           EL  C  CGR+F    L +H  +C K    +RKVFDS + RA G+++ +    +    P 
Sbjct: 378 ELGKCSHCGRSFLSLRLQRHSTVCGKMQGSKRKVFDSSRARAKGTELEQYLNWRG---PA 434

Query: 209 TDAKLAAAEARTKQWRQKHDQLIESFKAARNYNIAKRTGGXXXXXXXXV--VDTSLVECP 382
           TD   A    R   WRQKH+  I + + AR        GG        +   +   V+CP
Sbjct: 435 TDK--AEPPPRKSTWRQKHESFIRTLRHARQVQQVIARGGNPSDLPSILPAENPDYVQCP 492

Query: 383 YCHRRFNEDACNRHMPFCK 439
           +C R F      RH+P CK
Sbjct: 493 HCSRHFAPKVAERHIPKCK 511

>sp|Q9BGW4|CN140_MACFA Protein C14orf140 homolog
          Length = 531

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
 Frame = +2

Query: 29  ELIPCKCCGRNFRPDVLVKHEPICVKTSRKQRKVFDSGKQRADGSDIPKNKTLKPGEIPK 208
           +L  C  CGR F    L +H  IC +    +RKVFDS + RA G+++ +          K
Sbjct: 385 QLGECSHCGRKFLLFRLERHSNICSRMQGSKRKVFDSSRARAKGTELEQYLNW------K 438

Query: 209 TDAKLAAAEARTKQWRQKHDQLIESFKAARNYN--IAKRTGGXXXXXXXXVVDTSLVECP 382
             A   A   R   WRQKH+  I + + AR      AK              +   ++CP
Sbjct: 439 GPASAKAEPPRKNNWRQKHESFIHTLRQAREVQQVTAKGENRSHLPPILPAENPDYIQCP 498

Query: 383 YCHRRFNEDACNRHMPFCK 439
           +C   F      +H+P CK
Sbjct: 499 HCSHHFAPKVAEQHIPKCK 517

>sp|Q14585|ZN345_HUMAN Zinc finger protein 345 (Zinc finger protein HZF10)
          Length = 488

 Score = 33.5 bits (75), Expect = 0.86
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23  DFELIPCKCCGRNFR-PDVLVKHEPICVKTSRKQRKVFDSGKQRADGSDIPKNKTLKPGE 199
           D +L+ CK CG++F    VLV+H+ I   T  K  +  + GK    G+++  ++ +  GE
Sbjct: 58  DEKLLECKECGKDFSFVSVLVRHQRI--HTGEKPYECKECGKAFGSGANLAYHQRIHTGE 115

Query: 200 IP 205
            P
Sbjct: 116 KP 117

>sp|Q8GVE8|CAPP4_ARATH Phosphoenolpyruvate carboxylase 4 (PEPCase 4) (PEPC 4) (AtPPC4)
          Length = 1032

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = +3

Query: 543 HQLHQMDLARNHHSLHQFHHKVQQVKVDCLPIYQLRLLNQIYP---HGVLLVDHKHLLL- 710
           H L+ M +A  HH +H+ H+ V Q+   C  I+   L + I P   +  +      ++L 
Sbjct: 94  HSLNLMGIADTHHRMHKVHN-VTQLARSCDDIFSQLLQSGISPDELYKTVCKQEVEIVLT 152

Query: 711 ---TQITKQTLMLEILVLDHIL 767
              TQI ++TL  + + + H+L
Sbjct: 153 AHPTQINRRTLQYKHIRIAHLL 174

>sp|Q02398|UVSH_EMENI Postreplication repair protein uvsH/nuvA
          Length = 443

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 368 LVECPYCHRRFNEDACNRHMPFCKEQQAKLGP 463
           LV CP C RR  E+A  RH+  C     +L P
Sbjct: 175 LVPCPVCGRRMKEEAVFRHLDSCTGTAEELKP 206

>sp|Q66S41|MBL2_preOB Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
           protein) (Mannose-binding lectin)
          Length = 248

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 125 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 298
           K+   G     GS  PK +   PGE P  D+ LAA+E +  Q    H +   +F   R
Sbjct: 75  KLGPPGNPGPSGSPGPKGQKGDPGESPDCDSSLAASERKALQTEMAHIKKWLTFSLGR 132

>sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4)
          Length = 1518

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +3

Query: 429  HFVKNSKQN*ALEVIQQRNLCTKRLH*NQNNKCQLKNPHQLHQMD--LARNHHSLHQFHH 602
            H   N KQ       QQ+    ++ H  Q  + Q    HQ  Q+   L  +HH  HQ HH
Sbjct: 1016 HKKTNQKQQQQAAQQQQQQAAAQQQH-QQQQQHQQHQQHQQQQLHSPLHHHHHQGHQSHH 1074

Query: 603  KVQQ 614
              QQ
Sbjct: 1075 AQQQ 1078

>sp|Q66S37|MBL2_CERAE Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
           protein) (Mannose-binding lectin)
          Length = 248

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
 Frame = +2

Query: 125 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAE--------ARTKQW 253
           K+   G   + GS  PK +   PGE P  D+ LAA+E        AR K+W
Sbjct: 75  KLGPPGNPGSSGSPGPKGQKGDPGESPDGDSSLAASERKALQTEMARIKKW 125

>sp|Q66S45|MBL2_preCR Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
           protein) (Mannose-binding lectin)
          Length = 248

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 125 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 298
           K+   G     GS  PK +   PG+ P  D+ LAA+E +  Q    H +   +F   R
Sbjct: 75  KLGPPGNPGPSGSPGPKGQKGDPGKSPDCDSSLAASERKALQTEMAHIKKWLTFSLGR 132

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,767,720
Number of Sequences: 369166
Number of extensions: 1968440
Number of successful extensions: 6401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6372
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00980

  1. Dr_sW_024_L17
  2. Dr_sW_001_F20