Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_L17
(817 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CCG1|CN140_MOUSE Protein C14orf140 homolog 77 7e-14
sp|Q6AYP4|CN140_RAT Protein C14orf140 homolog 77 7e-14
sp|Q9BGW4|CN140_MACFA Protein C14orf140 homolog 70 9e-12
sp|Q14585|ZN345_HUMAN Zinc finger protein 345 (Zinc finger ... 33 0.72
sp|Q8GVE8|CAPP4_ARATH Phosphoenolpyruvate carboxylase 4 (PE... 33 1.2
sp|Q02398|UVSH_EMENI Postreplication repair protein uvsH/nuvA 32 2.1
sp|Q66S41|MBL2_preOB Mannose-binding protein C precursor (M... 32 2.1
sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4) 31 3.6
sp|Q66S37|MBL2_CERAE Mannose-binding protein C precursor (M... 31 4.6
sp|Q66S45|MBL2_preCR Mannose-binding protein C precursor (M... 30 6.1
>sp|Q8CCG1|CN140_MOUSE Protein C14orf140 homolog
Length = 527
Score = 76.6 bits (187), Expect = 7e-14
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Frame = +2
Query: 29 ELIPCKCCGRNFRPDVLVKHEPICVKTSRKQRKVFDSGKQRADGSDIPKNKTLKPGEIPK 208
EL C CGR+F L +H +C K +RKVFDS + RA G+++ + + P
Sbjct: 378 ELAKCSHCGRSFLSLRLQRHSTVCGKMQGSKRKVFDSSRARAKGTELEQYLNWRG---PA 434
Query: 209 TDAKLAAAEARTKQWRQKHDQLIESFKAARNYNIAKRTGGXXXXXXXXVV--DTSLVECP 382
T R WRQKH+ I + + AR GG + + V+CP
Sbjct: 435 TAKAETPPPPRKSTWRQKHESFIRTLRHARQVQQVIARGGNPSDLPSILPADNPDYVQCP 494
Query: 383 YCHRRFNEDACNRHMPFCK 439
+C R F RH+P CK
Sbjct: 495 HCSRHFAPKVAERHIPKCK 513
>sp|Q6AYP4|CN140_RAT Protein C14orf140 homolog
Length = 525
Score = 76.6 bits (187), Expect = 7e-14
Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Frame = +2
Query: 29 ELIPCKCCGRNFRPDVLVKHEPICVKTSRKQRKVFDSGKQRADGSDIPKNKTLKPGEIPK 208
EL C CGR+F L +H +C K +RKVFDS + RA G+++ + + P
Sbjct: 378 ELGKCSHCGRSFLSLRLQRHSTVCGKMQGSKRKVFDSSRARAKGTELEQYLNWRG---PA 434
Query: 209 TDAKLAAAEARTKQWRQKHDQLIESFKAARNYNIAKRTGGXXXXXXXXV--VDTSLVECP 382
TD A R WRQKH+ I + + AR GG + + V+CP
Sbjct: 435 TDK--AEPPPRKSTWRQKHESFIRTLRHARQVQQVIARGGNPSDLPSILPAENPDYVQCP 492
Query: 383 YCHRRFNEDACNRHMPFCK 439
+C R F RH+P CK
Sbjct: 493 HCSRHFAPKVAERHIPKCK 511
>sp|Q9BGW4|CN140_MACFA Protein C14orf140 homolog
Length = 531
Score = 69.7 bits (169), Expect = 9e-12
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
Frame = +2
Query: 29 ELIPCKCCGRNFRPDVLVKHEPICVKTSRKQRKVFDSGKQRADGSDIPKNKTLKPGEIPK 208
+L C CGR F L +H IC + +RKVFDS + RA G+++ + K
Sbjct: 385 QLGECSHCGRKFLLFRLERHSNICSRMQGSKRKVFDSSRARAKGTELEQYLNW------K 438
Query: 209 TDAKLAAAEARTKQWRQKHDQLIESFKAARNYN--IAKRTGGXXXXXXXXVVDTSLVECP 382
A A R WRQKH+ I + + AR AK + ++CP
Sbjct: 439 GPASAKAEPPRKNNWRQKHESFIHTLRQAREVQQVTAKGENRSHLPPILPAENPDYIQCP 498
Query: 383 YCHRRFNEDACNRHMPFCK 439
+C F +H+P CK
Sbjct: 499 HCSHHFAPKVAEQHIPKCK 517
>sp|Q14585|ZN345_HUMAN Zinc finger protein 345 (Zinc finger protein HZF10)
Length = 488
Score = 33.5 bits (75), Expect = 0.72
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 23 DFELIPCKCCGRNFR-PDVLVKHEPICVKTSRKQRKVFDSGKQRADGSDIPKNKTLKPGE 199
D +L+ CK CG++F VLV+H+ I T K + + GK G+++ ++ + GE
Sbjct: 58 DEKLLECKECGKDFSFVSVLVRHQRI--HTGEKPYECKECGKAFGSGANLAYHQRIHTGE 115
Query: 200 IP 205
P
Sbjct: 116 KP 117
>sp|Q8GVE8|CAPP4_ARATH Phosphoenolpyruvate carboxylase 4 (PEPCase 4) (PEPC 4) (AtPPC4)
Length = 1032
Score = 32.7 bits (73), Expect = 1.2
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Frame = +3
Query: 543 HQLHQMDLARNHHSLHQFHHKVQQVKVDCLPIYQLRLLNQIYP---HGVLLVDHKHLLL- 710
H L+ M +A HH +H+ H+ V Q+ C I+ L + I P + + ++L
Sbjct: 94 HSLNLMGIADTHHRMHKVHN-VTQLARSCDDIFSQLLQSGISPDELYKTVCKQEVEIVLT 152
Query: 711 ---TQITKQTLMLEILVLDHIL 767
TQI ++TL + + + H+L
Sbjct: 153 AHPTQINRRTLQYKHIRIAHLL 174
>sp|Q02398|UVSH_EMENI Postreplication repair protein uvsH/nuvA
Length = 443
Score = 32.0 bits (71), Expect = 2.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 368 LVECPYCHRRFNEDACNRHMPFCKEQQAKLGP 463
LV CP C RR E+A RH+ C +L P
Sbjct: 175 LVPCPVCGRRMKEEAVFRHLDSCTGTAEELKP 206
>sp|Q66S41|MBL2_preOB Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 32.0 bits (71), Expect = 2.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 125 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 298
K+ G GS PK + PGE P D+ LAA+E + Q H + +F R
Sbjct: 75 KLGPPGNPGPSGSPGPKGQKGDPGESPDCDSSLAASERKALQTEMAHIKKWLTFSLGR 132
>sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4)
Length = 1518
Score = 31.2 bits (69), Expect = 3.6
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 429 HFVKNSKQN*ALEVIQQRNLCTKRLH*NQNNKCQLKNPHQLHQMD--LARNHHSLHQFHH 602
H N KQ QQ+ ++ H Q + Q HQ Q+ L +HH HQ HH
Sbjct: 1016 HKKTNQKQQQQAAQQQQQQAAAQQQH-QQQQQHQQHQQHQQQQLHSPLHHHHHQGHQSHH 1074
Query: 603 KVQQ 614
QQ
Sbjct: 1075 AQQQ 1078
>sp|Q66S37|MBL2_CERAE Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.8 bits (68), Expect = 4.6
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Frame = +2
Query: 125 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAE--------ARTKQW 253
K+ G + GS PK + PGE P D+ LAA+E AR K+W
Sbjct: 75 KLGPPGNPGSSGSPGPKGQKGDPGESPDGDSSLAASERKALQTEMARIKKW 125
>sp|Q66S45|MBL2_preCR Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.4 bits (67), Expect = 6.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 125 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 298
K+ G GS PK + PG+ P D+ LAA+E + Q H + +F R
Sbjct: 75 KLGPPGNPGPSGSPGPKGQKGDPGKSPDCDSSLAASERKALQTEMAHIKKWLTFSLGR 132
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,050,701
Number of Sequences: 369166
Number of extensions: 1661088
Number of successful extensions: 5436
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5409
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)