Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F20
(802 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6AYP4|CN140_RAT Protein C14orf140 homolog 58 3e-08
sp|Q8CCG1|CN140_MOUSE Protein C14orf140 homolog 57 8e-08
sp|Q9BGW4|CN140_MACFA Protein C14orf140 homolog 54 6e-07
sp|Q8GVE8|CAPP4_ARATH Phosphoenolpyruvate carboxylase 4 (PE... 33 1.2
sp|Q02398|UVSH_EMENI Postreplication repair protein uvsH/nuvA 32 2.0
sp|Q66S41|MBL2_preOB Mannose-binding protein C precursor (M... 32 2.0
sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4) 31 3.4
sp|Q66S37|MBL2_CERAE Mannose-binding protein C precursor (M... 31 4.5
sp|Q66S45|MBL2_preCR Mannose-binding protein C precursor (M... 30 5.9
sp|Q9D168|PHF22_MOUSE PHD finger protein 22 30 7.7
>sp|Q6AYP4|CN140_RAT Protein C14orf140 homolog
Length = 525
Score = 57.8 bits (138), Expect = 3e-08
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +2
Query: 2 QRKVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 181
+RKVFDS + RA G+++ + + P TD A R WRQKH+ I + + AR
Sbjct: 408 KRKVFDSSRARAKGTELEQYLNWRG---PATDK--AEPPPRKSTWRQKHESFIRTLRHAR 462
Query: 182 NYNIAKRTGGXXXXXXXXVV--DTSLVECPYCHRRFNEDACNRHMPFCK 322
GG + + V+CP+C R F RH+P CK
Sbjct: 463 QVQQVIARGGNPSDLPSILPAENPDYVQCPHCSRHFAPKVAERHIPKCK 511
>sp|Q8CCG1|CN140_MOUSE Protein C14orf140 homolog
Length = 527
Score = 56.6 bits (135), Expect = 8e-08
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 2 QRKVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 181
+RKVFDS + RA G+++ + + P T R WRQKH+ I + + AR
Sbjct: 408 KRKVFDSSRARAKGTELEQYLNWRG---PATAKAETPPPPRKSTWRQKHESFIRTLRHAR 464
Query: 182 NYNIAKRTGGXXXXXXXXVV--DTSLVECPYCHRRFNEDACNRHMPFCK 322
GG + + V+CP+C R F RH+P CK
Sbjct: 465 QVQQVIARGGNPSDLPSILPADNPDYVQCPHCSRHFAPKVAERHIPKCK 513
>sp|Q9BGW4|CN140_MACFA Protein C14orf140 homolog
Length = 531
Score = 53.5 bits (127), Expect = 6e-07
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +2
Query: 2 QRKVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 181
+RKVFDS + RA G+++ + K A A R WRQKH+ I + + AR
Sbjct: 415 KRKVFDSSRARAKGTELEQYLNWKG------PASAKAEPPRKNNWRQKHESFIHTLRQAR 468
Query: 182 NYN--IAKRTGGXXXXXXXXVVDTSLVECPYCHRRFNEDACNRHMPFCK 322
AK + ++CP+C F +H+P CK
Sbjct: 469 EVQQVTAKGENRSHLPPILPAENPDYIQCPHCSHHFAPKVAEQHIPKCK 517
>sp|Q8GVE8|CAPP4_ARATH Phosphoenolpyruvate carboxylase 4 (PEPCase 4) (PEPC 4) (AtPPC4)
Length = 1032
Score = 32.7 bits (73), Expect = 1.2
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Frame = +3
Query: 426 HQLHQMDLARNHHSLHQFHHKVQQVKVDCLPIYQLRLLNQIYP---HGVLLVDHKHLLL- 593
H L+ M +A HH +H+ H+ V Q+ C I+ L + I P + + ++L
Sbjct: 94 HSLNLMGIADTHHRMHKVHN-VTQLARSCDDIFSQLLQSGISPDELYKTVCKQEVEIVLT 152
Query: 594 ---TQITKQTLMLEILVLDHIL 650
TQI ++TL + + + H+L
Sbjct: 153 AHPTQINRRTLQYKHIRIAHLL 174
>sp|Q02398|UVSH_EMENI Postreplication repair protein uvsH/nuvA
Length = 443
Score = 32.0 bits (71), Expect = 2.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 251 LVECPYCHRRFNEDACNRHMPFCKEQQAKLGP 346
LV CP C RR E+A RH+ C +L P
Sbjct: 175 LVPCPVCGRRMKEEAVFRHLDSCTGTAEELKP 206
>sp|Q66S41|MBL2_preOB Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 32.0 bits (71), Expect = 2.0
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 8 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 181
K+ G GS PK + PGE P D+ LAA+E + Q H + +F R
Sbjct: 75 KLGPPGNPGPSGSPGPKGQKGDPGESPDCDSSLAASERKALQTEMAHIKKWLTFSLGR 132
>sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4)
Length = 1518
Score = 31.2 bits (69), Expect = 3.4
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 312 HFVKNSKQN*ALEVIQQRNLCTKRLH*NQNNKCQLKNPHQLHQMD--LARNHHSLHQFHH 485
H N KQ QQ+ ++ H Q + Q HQ Q+ L +HH HQ HH
Sbjct: 1016 HKKTNQKQQQQAAQQQQQQAAAQQQH-QQQQQHQQHQQHQQQQLHSPLHHHHHQGHQSHH 1074
Query: 486 KVQQ 497
QQ
Sbjct: 1075 AQQQ 1078
>sp|Q66S37|MBL2_CERAE Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.8 bits (68), Expect = 4.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Frame = +2
Query: 8 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAE--------ARTKQW 136
K+ G + GS PK + PGE P D+ LAA+E AR K+W
Sbjct: 75 KLGPPGNPGSSGSPGPKGQKGDPGESPDGDSSLAASERKALQTEMARIKKW 125
>sp|Q66S45|MBL2_preCR Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.4 bits (67), Expect = 5.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 8 KVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 181
K+ G GS PK + PG+ P D+ LAA+E + Q H + +F R
Sbjct: 75 KLGPPGNPGPSGSPGPKGQKGDPGKSPDCDSSLAASERKALQTEMAHIKKWLTFSLGR 132
>sp|Q9D168|PHF22_MOUSE PHD finger protein 22
Length = 461
Score = 30.0 bits (66), Expect = 7.7
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 6/152 (3%)
Frame = +2
Query: 2 QRKVFDSGKQRADGSDIPKNKTLKPGEIPKTDAKLAAAEARTKQWRQKHDQLIESFKAAR 181
+++ D K +G D+PK L+ K + + + +T + D + SF+
Sbjct: 97 EKRPADKMKDVTEGIDVPKKPRLE-----KPETRSSPITVQTSKDLSMAD--LSSFEETS 149
Query: 182 NYNIAKRTGGXXXXXXXXVVDTS--LVECPYCHRRFNEDACNRHMPFCKEQQAKLGPRSN 355
+ A G V + LVEC CH +++D H P +++
Sbjct: 150 ADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDC---HKPQVTDKEVNDPRLVW 206
Query: 356 XXXXXXXXXXXXXSKQQMPTQKPA----SVTP 439
K Q P QKPA SVTP
Sbjct: 207 YCARCTRQMKRMAQKTQKPPQKPAPTVVSVTP 238
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,643,882
Number of Sequences: 369166
Number of extensions: 1641926
Number of successful extensions: 5338
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5314
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)