Planaria EST Database

DrC_00978

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00978
         (859 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8PJ55|IF2_XANAC  Translation initiation factor IF-2            35   0.35 
sp|P29966|MARCS_HUMAN  Myristoylated alanine-rich C-kinase s...    33   0.78 
sp|Q10021|RSP5_CAEEL  Probable splicing factor, arginine/ser...    33   0.78 
sp|Q8TFG9|YL61_SCHPO  Hypothetical serine/threonine-rich pro...    33   1.0  
sp|P08640|MUC1_YEAST  Mucin-like protein 1 precursor               33   1.3  
sp|Q4P0G6|CWC21_USTMA  Pre-mRNA splicing factor CWC21              32   2.3  
sp|Q6MG48|BAT2_RAT  Large proline-rich protein BAT2 (HLA-B-a...    32   2.3  
sp|Q92738|US6NL_HUMAN  USP6 N-terminal-like protein (Related...    32   3.0  
sp|O14686|MLL2_HUMAN  Myeloid/lymphoid or mixed-lineage leuk...    32   3.0  
sp|Q9QY14|FOXE3_MOUSE  Forkhead box protein E3                     32   3.0  

>sp|Q8PJ55|IF2_XANAC Translation initiation factor IF-2
          Length = 904

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 273 PIPLADAPRHCRIAPSPCASAAR---EPLAAPRRTRHPHSSPLSPPA 142
           P P+ADAP+     PS  A AAR    P +APR  R   +SP S PA
Sbjct: 186 PAPVADAPK-----PSAAAPAARLPSSPSSAPRAARPAGASPASRPA 227

>sp|P29966|MARCS_HUMAN Myristoylated alanine-rich C-kinase substrate (MARCKS) (Protein
           kinase C substrate, 80 kDa protein, light chain) (PKCSL)
           (80K-L protein)
          Length = 332

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -2

Query: 330 GTKADSCRCPTRSNRQCEPPIPLADAPRHCRIAPSPCASAAREPLAAPRRTRHPHSSPLS 151
           G  A +C  P+ +        P A   +    A  P A+AA    AAP +   P  SP +
Sbjct: 273 GASAAACEAPSAAG-------PGAPPEQEAAPAEEPAAAAASSACAAPSQEAQPECSPEA 325

Query: 150 PPA 142
           PPA
Sbjct: 326 PPA 328

>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 (RNA-binding
           protein srp-3) (CeSC35-2)
          Length = 208

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 33/108 (30%), Positives = 44/108 (40%)
 Frame = -2

Query: 480 SRQPQRQHRSPCSK*TLCQSNRRCERNPRRHLRESRQCSICLARRILAPDGTKADSCRCP 301
           SR P+R+ RSP          RR  R P R  R SR      +RR  +   +++ S    
Sbjct: 84  SRSPRRRSRSP----------RRRSRTPPR--RRSRSRDRKRSRRSRSRSSSRSRSPVRE 131

Query: 300 TRSNRQCEPPIPLADAPRHCRIAPSPCASAAREPLAAPRRTRHPHSSP 157
           +R   +   P P  D  R         AS +R PL A  R+R    SP
Sbjct: 132 SRRRSESRSPSPKRDLKRE--------ASRSRSPLPAKDRSRTRSGSP 171

>sp|Q8TFG9|YL61_SCHPO Hypothetical serine/threonine-rich protein PB15E9.01c in chromosome
           I precursor
          Length = 943

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
 Frame = -1

Query: 436 NSLPIKSTMREKSAATFARVPPVLNLLSKTDSRARWNKSGFLPLPNSIQSTMRASNPIG* 257
           +S P+ S     +  T A   P+ ++ S   + A    S  L   NS  +T  +S P+  
Sbjct: 304 SSTPLTSV--NSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361

Query: 256 CSSALQNRSVALCICSARATRCSAPHSPP------SLVTSVATSAPKLVRSELISANNPA 95
            +S     + +  + S  +T  ++  S P      +  TSV+++AP    S ++  ++ +
Sbjct: 362 VNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVS 421

Query: 94  KRDCVPRISTNATIAQS 44
                   ST AT A S
Sbjct: 422 STPLSSANSTTATSASS 438


 Score = 32.3 bits (72), Expect = 1.7
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
 Frame = -1

Query: 439 MNSLPIKSTMREKSAATFARVPPVLNLLSKTDSRARWNKSGFLPLPNSIQSTMRASNPIG 260
           ++S P+ S     + AT A   P+ ++ S T + A    S  L   NS  +T  +S P+ 
Sbjct: 420 VSSTPLSSA--NSTTATSASSTPLSSVNSTTATSA---SSTPLSSVNSTTATSASSTPLT 474

Query: 259 *CSSALQNRSVALCICSARATRCSAPHSPP------SLVTSVATSAPKLVRSELISANNP 98
             +S     + +  + S  +T  ++  S P      +  TSV+++AP    S ++  ++ 
Sbjct: 475 SVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSV 534

Query: 97  AKRDCVPRISTNATIAQS 44
           +        ST AT A S
Sbjct: 535 SSTPLSSANSTTATSASS 552

>sp|P08640|MUC1_YEAST Mucin-like protein 1 precursor
          Length = 1367

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 36/135 (26%), Positives = 57/135 (42%)
 Frame = -1

Query: 436 NSLPIKSTMREKSAATFARVPPVLNLLSKTDSRARWNKSGFLPLPNSIQSTMRASNPIG* 257
           +S P+ S+  E S+A      PV    S T       +S   P+P    ST  +S+    
Sbjct: 565 SSTPVTSSTTESSSA------PVPTPSSST------TESSSAPVPTPSSSTTESSSAPAP 612

Query: 256 CSSALQNRSVALCICSARATRCSAPHSPPSLVTSVATSAPKLVRSELISANNPAKRDCVP 77
             S+    S +  + S+     SAP   PS  T+ ++SAP    S   + ++ A    VP
Sbjct: 613 TPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAP---VP 669

Query: 76  RISTNATIAQSQITT 32
             S++ T + S   T
Sbjct: 670 TPSSSTTESSSAPVT 684


 Score = 30.4 bits (67), Expect = 6.6
 Identities = 34/127 (26%), Positives = 54/127 (42%)
 Frame = -1

Query: 436  NSLPIKSTMREKSAATFARVPPVLNLLSKTDSRARWNKSGFLPLPNSIQSTMRASNPIG* 257
            +S P+ S+  E S+A      PV    S T       +S   P+P    ST  +S+    
Sbjct: 691  SSAPVTSSTTESSSA------PVPTPSSST------TESSSAPVPTPSSSTTESSSAPVP 738

Query: 256  CSSALQNRSVALCICSARATRCSAPHSPPSLVTSVATSAPKLVRSELISANNPAKRDCVP 77
              S+    S +  + S+     SAP   PS  T+ ++SAP    S   + ++ A    VP
Sbjct: 739  TPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAP---VP 795

Query: 76   RISTNAT 56
              S++ T
Sbjct: 796  TPSSSTT 802

>sp|Q4P0G6|CWC21_USTMA Pre-mRNA splicing factor CWC21
          Length = 348

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = -2

Query: 420 NRRCERNPRRHLRESRQCSICLARRILAPDGTKADSCRCPTRSNRQCEPPIPLADAPRHC 241
           +R   R+P  H R SR  S   +R       +++ S    +RS+R        + +P   
Sbjct: 263 SRSRSRSPLSHSRSSRSRSRSRSR-----SRSRSRSPLSHSRSSR--------SRSPSRS 309

Query: 240 RIAPSPCASA-AREPLAAPRRTRHPHSSPLSPPARR 136
           R +PS CAS+ +R P   PRR      +P  PP RR
Sbjct: 310 R-SPSRCASSRSRSPAHRPRRHSSSRVNPPGPPPRR 344

>sp|Q6MG48|BAT2_RAT Large proline-rich protein BAT2 (HLA-B-associated transcript 2)
          Length = 2161

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
 Frame = -2

Query: 477 RQPQRQHRSPCSK*TLCQSNRRCERNPRRHLRESRQ-CSICLAR---RILAPDGT-KADS 313
           RQ ++Q  S  S   + ++ RR E   RR   E R  C+  L R   +  APD   KA+ 
Sbjct: 449 RQRRKQSSSEISL-AVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEP 507

Query: 312 CRCPTRSNRQCEPPIPLADAPRHCRIAPSPCASAAREP---------LAAPRRTRHPHSS 160
              P        PP+   + P    + P+P  +  ++P          +AP +   P  +
Sbjct: 508 AAPPVTPPAPALPPVVPKETPTPPALPPTPTPTPEKDPEEPAHAPPVQSAPTQAGPPAPT 567

Query: 159 PLSPPARRNSSEASSF 112
           P+S     +S+ + SF
Sbjct: 568 PVSGGGTASSTSSGSF 583

>sp|Q92738|US6NL_HUMAN USP6 N-terminal-like protein (Related to the N terminus of tre)
           (RN-tre)
          Length = 828

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 30/113 (26%), Positives = 40/113 (35%)
 Frame = -2

Query: 465 RQHRSPCSK*TLCQSNRRCERNPRRHLRESRQCSICLARRILAPDGTKADSCRCPTRSNR 286
           R+H  P S  +   +    +  P  H R   Q            DG        P+ SN 
Sbjct: 587 RKHAEPSSSPSKVSNKFTFKVQPPSHARYPSQL-----------DGEARGLAHPPSYSN- 634

Query: 285 QCEPPIPLADAPRHCRIAPSPCASAAREPLAAPRRTRHPHSSPLSPPARRNSS 127
              PP+   ++P+H   A S  AS    P      +R PH S LS  A    S
Sbjct: 635 ---PPVYHGNSPKHFPTANSSFASPQFSPGTQLNPSRRPHGSTLSVSASPEKS 684

>sp|O14686|MLL2_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 2 (ALL1-related
           protein)
          Length = 5262

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 303 PTRSNRQCEPP--IPLADAPRHCRIAPSPCASAAREPLAAPRRTRHPHSSPLSPP 145
           P  ++R   PP   P++  P    ++P P AS    P      +  P  SPLSPP
Sbjct: 566 PPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPP 620


 Score = 30.8 bits (68), Expect = 5.0
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 303 PTRSNRQCEPP--IPLADAPRHCRIAPSPCASAAREPLAAPRRTRHPHSSPLSPPA 142
           P  ++R   PP   P++  P    ++P P  S         R +  P  SPLSPPA
Sbjct: 620 PPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPA 675

>sp|Q9QY14|FOXE3_MOUSE Forkhead box protein E3
          Length = 288

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 285 QCEPPIPLADAPRHCRIAPS---PCASAAREPLAAPRRTRHPHSSPL 154
           Q EPP P+A  P  C    +   PCA+AA  PL +P   R    +PL
Sbjct: 204 QPEPPGPVAPEPPCCAAPDAAFPPCAAAASPPLYSPASERLGLPAPL 250

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,336,658
Number of Sequences: 369166
Number of extensions: 2140388
Number of successful extensions: 8240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8195
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00978

  1. Dr_sW_024_L09
  2. Dr_sW_016_B10