Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_L09
(633 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29966|MARCS_HUMAN Myristoylated alanine-rich C-kinase s... 35 0.16
sp|Q92738|US6NL_HUMAN USP6 N-terminal-like protein (Related... 34 0.27
sp|Q8PJ55|IF2_XANAC Translation initiation factor IF-2 34 0.27
sp|O08789|MNT_MOUSE MAX binding protein MNT (ROX protein) (... 32 1.0
sp|O14686|MLL2_HUMAN Myeloid/lymphoid or mixed-lineage leuk... 32 1.0
sp|Q924X6|LRP8_MOUSE Low-density lipoprotein receptor-relat... 32 1.0
sp|Q4P0G6|CWC21_USTMA Pre-mRNA splicing factor CWC21 32 1.4
sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/ser... 32 1.4
sp|Q9QY14|FOXE3_MOUSE Forkhead box protein E3 32 1.4
sp|Q8TFG9|YL61_SCHPO Hypothetical serine/threonine-rich pro... 32 1.4
>sp|P29966|MARCS_HUMAN Myristoylated alanine-rich C-kinase substrate (MARCKS) (Protein
kinase C substrate, 80 kDa protein, light chain) (PKCSL)
(80K-L protein)
Length = 332
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -1
Query: 330 GTKADSCHCPTRSNRQCEPPIPLADAPQHCRIAPSPCASAAREPLAAPRRTRHPHSSPLS 151
G A +C P+ + P A Q A P A+AA AAP + P SP +
Sbjct: 273 GASAAACEAPSAAG-------PGAPPEQEAAPAEEPAAAAASSACAAPSQEAQPECSPEA 325
Query: 150 PPA 142
PPA
Sbjct: 326 PPA 328
>sp|Q92738|US6NL_HUMAN USP6 N-terminal-like protein (Related to the N terminus of tre)
(RN-tre)
Length = 828
Score = 34.3 bits (77), Expect = 0.27
Identities = 31/113 (27%), Positives = 41/113 (36%)
Frame = -1
Query: 465 RQHRSPCSK*TLCQSNRRCERNPRRHLRESRQCSICLTRRILAPDGTKADSCHCPTRSNR 286
R+H P S + + + P H R Q DG H P+ SN
Sbjct: 587 RKHAEPSSSPSKVSNKFTFKVQPPSHARYPSQL-----------DGEARGLAHPPSYSN- 634
Query: 285 QCEPPIPLADAPQHCRIAPSPCASAAREPLAAPRRTRHPHSSPLSPPARRNSS 127
PP+ ++P+H A S AS P +R PH S LS A S
Sbjct: 635 ---PPVYHGNSPKHFPTANSSFASPQFSPGTQLNPSRRPHGSTLSVSASPEKS 684
>sp|Q8PJ55|IF2_XANAC Translation initiation factor IF-2
Length = 904
Score = 34.3 bits (77), Expect = 0.27
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -1
Query: 273 PIPLADAPQHCRIAPSPCASAAR---EPLAAPRRTRHPHSSPLSPPA 142
P P+ADAP+ PS A AAR P +APR R +SP S PA
Sbjct: 186 PAPVADAPK-----PSAAAPAARLPSSPSSAPRAARPAGASPASRPA 227
>sp|O08789|MNT_MOUSE MAX binding protein MNT (ROX protein) (MYC antagonist MNT)
Length = 591
Score = 32.3 bits (72), Expect = 1.0
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = -1
Query: 300 TRSNRQCEPPIPLADAPQHCRIAPSPCASAA------REPLAAPRRTRHPHSSPLSPPAR 139
T S + PP PL A Q +AP A + +EP+ P R + P +PL P A+
Sbjct: 97 TNSPQSLPPPPPLPPAAQPLPLAPRQPALVSTPGLSIKEPVTLPTRPQVPTPAPLLPDAK 156
Query: 138 RNSSEASS 115
+ S
Sbjct: 157 TTVAPTGS 164
>sp|O14686|MLL2_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 2 (ALL1-related
protein)
Length = 5262
Score = 32.3 bits (72), Expect = 1.0
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 303 PTRSNRQCEPP--IPLADAPQHCRIAPSPCASAAREPLAAPRRTRHPHSSPLSPP 145
P ++R PP P++ P+ ++P P AS P + P SPLSPP
Sbjct: 566 PPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPP 620
Score = 31.6 bits (70), Expect = 1.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 303 PTRSNRQCEPP--IPLADAPQHCRIAPSPCASAAREPLAAPRRTRHPHSSPLSPPA 142
P ++R PP P++ P+ ++P P S R + P SPLSPPA
Sbjct: 620 PPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPA 675
Score = 29.3 bits (64), Expect = 8.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 267 PLADAPQHCRIAPSPCASAAREPLAAPRRTRHPHSSPLSPP 145
PL+ P+ ++P P AS P + P SP+SPP
Sbjct: 607 PLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPP 647
>sp|Q924X6|LRP8_MOUSE Low-density lipoprotein receptor-related protein 8 precursor
(Apolipoprotein E receptor 2)
Length = 996
Score = 32.3 bits (72), Expect = 1.0
Identities = 20/82 (24%), Positives = 32/82 (39%)
Frame = -1
Query: 417 RRCERNPRRHLRESRQCSICLTRRILAPDGTKADSCHCPTRSNRQCEPPIPLADAPQHCR 238
+RC R P+ + + +TR + A + H PT N E P A AP
Sbjct: 765 KRCYRAPQS--TSTTTLASAMTRTVPATTRAPGTTIHDPTYQNHSTETPSQTAAAPHSVN 822
Query: 237 IAPSPCASAAREPLAAPRRTRH 172
+ +P S + A ++H
Sbjct: 823 VPRAPSTSPSTPSPATSNHSQH 844
>sp|Q4P0G6|CWC21_USTMA Pre-mRNA splicing factor CWC21
Length = 348
Score = 32.0 bits (71), Expect = 1.4
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = -1
Query: 420 NRRCERNPRRHLRESRQCSICLTRRILAPDGTKADSCHCPTRSNRQCEPPIPLADAPQHC 241
+R R+P H R SR S +R +++ S +RS+R + +P
Sbjct: 263 SRSRSRSPLSHSRSSRSRSRSRSR-----SRSRSRSPLSHSRSSR--------SRSPSRS 309
Query: 240 RIAPSPCASA-AREPLAAPRRTRHPHSSPLSPPARR 136
R +PS CAS+ +R P PRR +P PP RR
Sbjct: 310 R-SPSRCASSRSRSPAHRPRRHSSSRVNPPGPPPRR 344
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 (RNA-binding
protein srp-3) (CeSC35-2)
Length = 208
Score = 32.0 bits (71), Expect = 1.4
Identities = 32/108 (29%), Positives = 44/108 (40%)
Frame = -1
Query: 480 SRQPQRQHRSPCSK*TLCQSNRRCERNPRRHLRESRQCSICLTRRILAPDGTKADSCHCP 301
SR P+R+ RSP RR R P R R SR +RR + +++ S
Sbjct: 84 SRSPRRRSRSP----------RRRSRTPPR--RRSRSRDRKRSRRSRSRSSSRSRSPVRE 131
Query: 300 TRSNRQCEPPIPLADAPQHCRIAPSPCASAAREPLAAPRRTRHPHSSP 157
+R + P P D + AS +R PL A R+R SP
Sbjct: 132 SRRRSESRSPSPKRDLKRE--------ASRSRSPLPAKDRSRTRSGSP 171
>sp|Q9QY14|FOXE3_MOUSE Forkhead box protein E3
Length = 288
Score = 32.0 bits (71), Expect = 1.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -1
Query: 285 QCEPPIPLADAPQHCRIAPS---PCASAAREPLAAPRRTRHPHSSPL 154
Q EPP P+A P C + PCA+AA PL +P R +PL
Sbjct: 204 QPEPPGPVAPEPPCCAAPDAAFPPCAAAASPPLYSPASERLGLPAPL 250
>sp|Q8TFG9|YL61_SCHPO Hypothetical serine/threonine-rich protein PB15E9.01c in chromosome
I precursor
Length = 943
Score = 32.0 bits (71), Expect = 1.4
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Frame = -3
Query: 436 NSLPIKSTMREKSAATFARVPPVLNLLNKTDSRARWNKSGFLPLPNSIQSTMRASNPIG* 257
+S P+ S + T A P+ ++ + + A S L NS +T +S P+
Sbjct: 304 SSTPLTSV--NSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361
Query: 256 CSSALQNRSVALCICSARATRCSAPHSPP------SLVTSVATSAPKLVRSELISANNPA 95
+S + + + S +T ++ S P + TSV+++AP S ++ ++ +
Sbjct: 362 VNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVS 421
Query: 94 KRDCVPRISTNATIAQS 44
ST AT A S
Sbjct: 422 STPLSSANSTTATSASS 438
Score = 31.2 bits (69), Expect = 2.3
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Frame = -3
Query: 439 MNSLPIKSTMREKSAATFARVPPVLNLLNKTDSRARWNKSGFLPLPNSIQSTMRASNPIG 260
++S P+ S + AT A P+ ++ + T + A S L NS +T +S P+
Sbjct: 420 VSSTPLSSA--NSTTATSASSTPLSSVNSTTATSA---SSTPLSSVNSTTATSASSTPLT 474
Query: 259 *CSSALQNRSVALCICSARATRCSAPHSPP------SLVTSVATSAPKLVRSELISANNP 98
+S + + + S +T ++ S P + TSV+++AP S ++ ++
Sbjct: 475 SVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSV 534
Query: 97 AKRDCVPRISTNATIAQS 44
+ ST AT A S
Sbjct: 535 SSTPLSSANSTTATSASS 552
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,138,227
Number of Sequences: 369166
Number of extensions: 1380297
Number of successful extensions: 6459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6416
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)