Planaria EST Database

DrC_00957

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00957
         (745 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9WV03|FA50A_MOUSE  Protein FAM50A (XAP-5 protein)             278   1e-74
sp|Q14320|XAP5_HUMAN  XAP-5 protein (HXC-26 protein)              277   2e-74
sp|Q9WTJ8|FA50B_MOUSE  Protein FAM50B (XAP-5-like protein)        267   3e-71
sp|Q9Y247|XAP5L_HUMAN  XAP-5-like protein                         261   1e-69
sp|P44180|YE05_HAEIN  Hypothetical protein HI1405                  33   0.62 
sp|Q61510|TRI25_MOUSE  Tripartite motif protein 25 (Zinc fin...    33   0.80 
sp|P17065|SEC2_YEAST  GTPase-activating protein SEC2               32   1.4  
sp|Q14789|GOGB1_HUMAN  Golgin subfamily B member 1 (Giantin)...    32   1.8  
sp|Q6MC72|AMPA_PARUW  Probable cytosol aminopeptidase (Leuci...    31   3.1  
sp|P04589|POL_HV1EL  Gag-Pol polyprotein (Pr160Gag-Pol) [Con...    31   3.1  

>sp|Q9WV03|FA50A_MOUSE Protein FAM50A (XAP-5 protein)
          Length = 339

 Score =  278 bits (711), Expect = 1e-74
 Identities = 128/184 (69%), Positives = 156/184 (84%)
 Frame = +2

Query: 128 RYGVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIKITYSYWDGSGHRRE 307
           + G NP VDT F+PD  R+EEEN+LRE+L++EW  +Q  IK+EEI+IT+SYWDGSGHRR 
Sbjct: 155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRT 214

Query: 308 IVAKKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARG 487
           +  KKG ++Q FL K LE LRK+F EL++  V++LMYIKEDLIIPHH++FYDFIVTKARG
Sbjct: 215 VKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARG 274

Query: 488 KSGPLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWD 667
           KSGPLF FD  DDVR++ DA+VEK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD
Sbjct: 275 KSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWD 334

Query: 668 QYTI 679
           +YTI
Sbjct: 335 KYTI 338

>sp|Q14320|XAP5_HUMAN XAP-5 protein (HXC-26 protein)
          Length = 339

 Score =  277 bits (708), Expect = 2e-74
 Identities = 127/184 (69%), Positives = 156/184 (84%)
 Frame = +2

Query: 128 RYGVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIKITYSYWDGSGHRRE 307
           + G NP VDT F+PD  R+EEEN+LRE+L++EW  +Q  IK+EEI+IT+SYWDGSGHRR 
Sbjct: 155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRT 214

Query: 308 IVAKKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARG 487
           +  +KG ++Q FL K LE LRK+F EL++  V++LMYIKEDLIIPHH++FYDFIVTKARG
Sbjct: 215 VKMRKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARG 274

Query: 488 KSGPLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWD 667
           KSGPLF FD  DDVR++ DA+VEK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD
Sbjct: 275 KSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWD 334

Query: 668 QYTI 679
           +YTI
Sbjct: 335 KYTI 338

>sp|Q9WTJ8|FA50B_MOUSE Protein FAM50B (XAP-5-like protein)
          Length = 334

 Score =  267 bits (682), Expect = 3e-71
 Identities = 118/182 (64%), Positives = 152/182 (83%)
 Frame = +2

Query: 134 GVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIKITYSYWDGSGHRREIV 313
           G NP VDT F+PD  R+EEEN+LRE+L++EW  ++  +K EE++IT+SYWDGSGHRR + 
Sbjct: 152 GKNPDVDTSFLPDREREEEENRLREELRQEWEAKREKVKGEEVEITFSYWDGSGHRRTVR 211

Query: 314 AKKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARGKS 493
             KG ++Q FL + L+ LR++F EL+A  V++LMY+KEDLI+PH++TFYDFIV KARGKS
Sbjct: 212 MSKGSTVQQFLKRALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTFYDFIVAKARGKS 271

Query: 494 GPLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWDQY 673
           GPLF FD  DDVR++ DA++EK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD+Y
Sbjct: 272 GPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDRY 331

Query: 674 TI 679
           TI
Sbjct: 332 TI 333

>sp|Q9Y247|XAP5L_HUMAN XAP-5-like protein
          Length = 325

 Score =  261 bits (668), Expect = 1e-69
 Identities = 115/182 (63%), Positives = 153/182 (84%)
 Frame = +2

Query: 134 GVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIKITYSYWDGSGHRREIV 313
           G NP VDT F+PD  R+EEEN+LRE+L++EW  ++  +K+EE+++T+SYWDGSGHRR + 
Sbjct: 143 GKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVR 202

Query: 314 AKKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARGKS 493
            +KG ++Q FL K L+ LRK+F EL++  V++LM+IKEDLI+PH++TFYDFI+ +ARGKS
Sbjct: 203 VRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKS 262

Query: 494 GPLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWDQY 673
           GPLF FD  DDVR++ DA++EK++SHAGKV LRSWYE+NKHIFPASRWE YDP K WD+Y
Sbjct: 263 GPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKY 322

Query: 674 TI 679
           TI
Sbjct: 323 TI 324

>sp|P44180|YE05_HAEIN Hypothetical protein HI1405
          Length = 366

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 134 GVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIK 265
           G  P+ +    P   + E ENK  +D++KE LE+ +  K+EEI+
Sbjct: 214 GKEPKGEQPTKPKEKKSEPENKKEDDVEKEELEKSLKAKDEEIQ 257

>sp|Q61510|TRI25_MOUSE Tripartite motif protein 25 (Zinc finger protein 147)
           (Estrogen-responsive finger protein) (Efp)
          Length = 634

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
 Frame = +2

Query: 257 EIKITYSYWDGSGHRREIVAKKGYSIQVFLSKCLEQLRKEFPELKA------TSVDKLMY 418
           ++ I +S+ +G+    E V  K   +Q  + + +EQLR+E+ E+KA      TS  + + 
Sbjct: 204 KLTIMHSHINGATKALEDVRSKQQCVQDSMKRKMEQLRQEYMEMKAVIDAAETSSLRRLK 263

Query: 419 IKEDLIIPHHNTFYDFIVTK----ARGKSGPLFLFDSRDDVRIMQDAS 550
            +E  +    +T Y  +V K     + K+    + D  D+   ++ A+
Sbjct: 264 EEEKRVYGKFDTIYQVLVKKKSEMQKLKAEVELIMDKGDEFEFLEKAA 311

>sp|P17065|SEC2_YEAST GTPase-activating protein SEC2
          Length = 759

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +2

Query: 179 RKEEENKLREDLKKE-----WLERQISIKNEEIK-ITYSYWDGSGHRREIVAKKGYSIQV 340
           R +E  +LRED+ KE       E +    N+E++ +T S +D + +      K+ Y+I++
Sbjct: 69  RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEI 128

Query: 341 FLSKCLEQLRKE 376
              +  EQLR++
Sbjct: 129 LNKRLTEQLREK 140

>sp|Q14789|GOGB1_HUMAN Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372 kDa Golgi
            complex-associated protein) (GCP372)
          Length = 3259

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +2

Query: 152  DTRFIPDIYRKEEENKLRED---LKKEWLERQISIKNEEIKITYSYWDGSGHRREIVAKK 322
            + +F   I  KEEE +L+ED   + K+ L RQ+SI  EE+KI  S  +   H ++I   K
Sbjct: 2212 ERKFSDAIQSKEEEIRLKEDNCSVLKDQL-RQMSIHMEELKINISRLE---HDKQIWESK 2267

Query: 323  GYSIQVFLSKCLEQLRKEFPEL 388
              +      K  + L+ E  EL
Sbjct: 2268 AQTEVQLQQKVCDTLQGENKEL 2289

>sp|Q6MC72|AMPA_PARUW Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
           (Leucyl aminopeptidase)
          Length = 499

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 284 DGSGHRREIVAKKGYSIQV-FLSKCLEQLRKEFPELKATSVDKLMYIKEDL 433
           DG  + R+++      I   +L+KC + L +E+P++K T  DK    KE +
Sbjct: 176 DGVYYTRDLINGNADEITPQYLAKCAQGLSQEYPQIKTTVFDKKRLEKEQM 226

>sp|P04589|POL_HV1EL Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein p17
           (MA); Capsid protein p24 (CA); p2 spacer peptide;
           Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
           pol); Protease (Retropepsin) (PR); Reverse
           transcriptase/ribonuclease H (p66 RT); p51 RT; p15;
           Integrase (IN)]
          Length = 1435

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
 Frame = +2

Query: 200 LREDLKKEWLERQISIKNEEIKITYSY------WDGSGHRREIVAKKGYSIQVFLSKCLE 361
           L ED +K       SI NE   I Y Y      W GS              Q  ++K LE
Sbjct: 707 LDEDFRKYTAFTISSINNETPGIRYQYNVLPQGWKGSPA----------IFQSSMTKILE 756

Query: 362 QLRKEFPELKATSVDKLMYIKEDLIIPHHNT 454
             RK+ PE+        +Y+  DL I  H T
Sbjct: 757 PFRKQNPEMVIYQYMDDLYVGSDLEIGQHRT 787

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,637,070
Number of Sequences: 369166
Number of extensions: 1711407
Number of successful extensions: 5227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5226
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00957

  1. Dr_sW_024_D18
  2. Dr_sW_026_P08