Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D18
(745 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WV03|FA50A_MOUSE Protein FAM50A (XAP-5 protein) 278 1e-74
sp|Q14320|XAP5_HUMAN XAP-5 protein (HXC-26 protein) 277 2e-74
sp|Q9WTJ8|FA50B_MOUSE Protein FAM50B (XAP-5-like protein) 267 3e-71
sp|Q9Y247|XAP5L_HUMAN XAP-5-like protein 261 1e-69
sp|P44180|YE05_HAEIN Hypothetical protein HI1405 33 0.62
sp|Q61510|TRI25_MOUSE Tripartite motif protein 25 (Zinc fin... 33 0.80
sp|P17065|SEC2_YEAST GTPase-activating protein SEC2 32 1.4
sp|Q14789|GOGB1_HUMAN Golgin subfamily B member 1 (Giantin)... 32 1.8
sp|Q6MC72|AMPA_PARUW Probable cytosol aminopeptidase (Leuci... 31 3.1
sp|P04589|POL_HV1EL Gag-Pol polyprotein (Pr160Gag-Pol) [Con... 31 3.1
>sp|Q9WV03|FA50A_MOUSE Protein FAM50A (XAP-5 protein)
Length = 339
Score = 278 bits (711), Expect = 1e-74
Identities = 128/184 (69%), Positives = 156/184 (84%)
Frame = +2
Query: 128 RYGVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIKITYSYWDGSGHRRE 307
+ G NP VDT F+PD R+EEEN+LRE+L++EW +Q IK+EEI+IT+SYWDGSGHRR
Sbjct: 155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRT 214
Query: 308 IVAKKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARG 487
+ KKG ++Q FL K LE LRK+F EL++ V++LMYIKEDLIIPHH++FYDFIVTKARG
Sbjct: 215 VKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARG 274
Query: 488 KSGPLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWD 667
KSGPLF FD DDVR++ DA+VEK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD
Sbjct: 275 KSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWD 334
Query: 668 QYTI 679
+YTI
Sbjct: 335 KYTI 338
>sp|Q14320|XAP5_HUMAN XAP-5 protein (HXC-26 protein)
Length = 339
Score = 277 bits (708), Expect = 2e-74
Identities = 127/184 (69%), Positives = 156/184 (84%)
Frame = +2
Query: 128 RYGVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIKITYSYWDGSGHRRE 307
+ G NP VDT F+PD R+EEEN+LRE+L++EW +Q IK+EEI+IT+SYWDGSGHRR
Sbjct: 155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRT 214
Query: 308 IVAKKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARG 487
+ +KG ++Q FL K LE LRK+F EL++ V++LMYIKEDLIIPHH++FYDFIVTKARG
Sbjct: 215 VKMRKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARG 274
Query: 488 KSGPLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWD 667
KSGPLF FD DDVR++ DA+VEK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD
Sbjct: 275 KSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWD 334
Query: 668 QYTI 679
+YTI
Sbjct: 335 KYTI 338
>sp|Q9WTJ8|FA50B_MOUSE Protein FAM50B (XAP-5-like protein)
Length = 334
Score = 267 bits (682), Expect = 3e-71
Identities = 118/182 (64%), Positives = 152/182 (83%)
Frame = +2
Query: 134 GVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIKITYSYWDGSGHRREIV 313
G NP VDT F+PD R+EEEN+LRE+L++EW ++ +K EE++IT+SYWDGSGHRR +
Sbjct: 152 GKNPDVDTSFLPDREREEEENRLREELRQEWEAKREKVKGEEVEITFSYWDGSGHRRTVR 211
Query: 314 AKKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARGKS 493
KG ++Q FL + L+ LR++F EL+A V++LMY+KEDLI+PH++TFYDFIV KARGKS
Sbjct: 212 MSKGSTVQQFLKRALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTFYDFIVAKARGKS 271
Query: 494 GPLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWDQY 673
GPLF FD DDVR++ DA++EK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD+Y
Sbjct: 272 GPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDRY 331
Query: 674 TI 679
TI
Sbjct: 332 TI 333
>sp|Q9Y247|XAP5L_HUMAN XAP-5-like protein
Length = 325
Score = 261 bits (668), Expect = 1e-69
Identities = 115/182 (63%), Positives = 153/182 (84%)
Frame = +2
Query: 134 GVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIKITYSYWDGSGHRREIV 313
G NP VDT F+PD R+EEEN+LRE+L++EW ++ +K+EE+++T+SYWDGSGHRR +
Sbjct: 143 GKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVR 202
Query: 314 AKKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARGKS 493
+KG ++Q FL K L+ LRK+F EL++ V++LM+IKEDLI+PH++TFYDFI+ +ARGKS
Sbjct: 203 VRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKS 262
Query: 494 GPLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWDQY 673
GPLF FD DDVR++ DA++EK++SHAGKV LRSWYE+NKHIFPASRWE YDP K WD+Y
Sbjct: 263 GPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKY 322
Query: 674 TI 679
TI
Sbjct: 323 TI 324
>sp|P44180|YE05_HAEIN Hypothetical protein HI1405
Length = 366
Score = 33.5 bits (75), Expect = 0.62
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 134 GVNPRVDTRFIPDIYRKEEENKLREDLKKEWLERQISIKNEEIK 265
G P+ + P + E ENK +D++KE LE+ + K+EEI+
Sbjct: 214 GKEPKGEQPTKPKEKKSEPENKKEDDVEKEELEKSLKAKDEEIQ 257
>sp|Q61510|TRI25_MOUSE Tripartite motif protein 25 (Zinc finger protein 147)
(Estrogen-responsive finger protein) (Efp)
Length = 634
Score = 33.1 bits (74), Expect = 0.80
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Frame = +2
Query: 257 EIKITYSYWDGSGHRREIVAKKGYSIQVFLSKCLEQLRKEFPELKA------TSVDKLMY 418
++ I +S+ +G+ E V K +Q + + +EQLR+E+ E+KA TS + +
Sbjct: 204 KLTIMHSHINGATKALEDVRSKQQCVQDSMKRKMEQLRQEYMEMKAVIDAAETSSLRRLK 263
Query: 419 IKEDLIIPHHNTFYDFIVTK----ARGKSGPLFLFDSRDDVRIMQDAS 550
+E + +T Y +V K + K+ + D D+ ++ A+
Sbjct: 264 EEEKRVYGKFDTIYQVLVKKKSEMQKLKAEVELIMDKGDEFEFLEKAA 311
>sp|P17065|SEC2_YEAST GTPase-activating protein SEC2
Length = 759
Score = 32.3 bits (72), Expect = 1.4
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +2
Query: 179 RKEEENKLREDLKKE-----WLERQISIKNEEIK-ITYSYWDGSGHRREIVAKKGYSIQV 340
R +E +LRED+ KE E + N+E++ +T S +D + + K+ Y+I++
Sbjct: 69 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEI 128
Query: 341 FLSKCLEQLRKE 376
+ EQLR++
Sbjct: 129 LNKRLTEQLREK 140
>sp|Q14789|GOGB1_HUMAN Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372 kDa Golgi
complex-associated protein) (GCP372)
Length = 3259
Score = 32.0 bits (71), Expect = 1.8
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 152 DTRFIPDIYRKEEENKLRED---LKKEWLERQISIKNEEIKITYSYWDGSGHRREIVAKK 322
+ +F I KEEE +L+ED + K+ L RQ+SI EE+KI S + H ++I K
Sbjct: 2212 ERKFSDAIQSKEEEIRLKEDNCSVLKDQL-RQMSIHMEELKINISRLE---HDKQIWESK 2267
Query: 323 GYSIQVFLSKCLEQLRKEFPEL 388
+ K + L+ E EL
Sbjct: 2268 AQTEVQLQQKVCDTLQGENKEL 2289
>sp|Q6MC72|AMPA_PARUW Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 499
Score = 31.2 bits (69), Expect = 3.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 284 DGSGHRREIVAKKGYSIQV-FLSKCLEQLRKEFPELKATSVDKLMYIKEDL 433
DG + R+++ I +L+KC + L +E+P++K T DK KE +
Sbjct: 176 DGVYYTRDLINGNADEITPQYLAKCAQGLSQEYPQIKTTVFDKKRLEKEQM 226
>sp|P04589|POL_HV1EL Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein p17
(MA); Capsid protein p24 (CA); p2 spacer peptide;
Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
pol); Protease (Retropepsin) (PR); Reverse
transcriptase/ribonuclease H (p66 RT); p51 RT; p15;
Integrase (IN)]
Length = 1435
Score = 31.2 bits (69), Expect = 3.1
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Frame = +2
Query: 200 LREDLKKEWLERQISIKNEEIKITYSY------WDGSGHRREIVAKKGYSIQVFLSKCLE 361
L ED +K SI NE I Y Y W GS Q ++K LE
Sbjct: 707 LDEDFRKYTAFTISSINNETPGIRYQYNVLPQGWKGSPA----------IFQSSMTKILE 756
Query: 362 QLRKEFPELKATSVDKLMYIKEDLIIPHHNT 454
RK+ PE+ +Y+ DL I H T
Sbjct: 757 PFRKQNPEMVIYQYMDDLYVGSDLEIGQHRT 787
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,637,070
Number of Sequences: 369166
Number of extensions: 1711407
Number of successful extensions: 5227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5226
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)