Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_P08
(436 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WV03|FA50A_MOUSE Protein FAM50A (XAP-5 protein) 197 1e-50
sp|Q14320|XAP5_HUMAN XAP-5 protein (HXC-26 protein) 196 2e-50
sp|Q9WTJ8|FA50B_MOUSE Protein FAM50B (XAP-5-like protein) 189 3e-48
sp|Q9Y247|XAP5L_HUMAN XAP-5-like protein 184 5e-47
sp|Q5V4I4|GLPK_HALMA Glycerol kinase (ATP:glycerol 3-phosph... 31 1.3
sp|Q6MC72|AMPA_PARUW Probable cytosol aminopeptidase (Leuci... 30 1.7
sp|P57416|PYRC_BUCAI Dihydroorotase (DHOase) 30 1.7
sp|P42950|YJK3_YEAST Putative 70.4 kDa transcriptional regu... 30 2.9
sp|Q8K9L2|PYRC_BUCAP Dihydroorotase (DHOase) 30 2.9
sp|Q5ND56|FA57A_MOUSE Protein FAM57A 29 3.8
>sp|Q9WV03|FA50A_MOUSE Protein FAM50A (XAP-5 protein)
Length = 339
Score = 197 bits (500), Expect = 1e-50
Identities = 90/121 (74%), Positives = 106/121 (87%)
Frame = +2
Query: 8 KKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARGKSG 187
KKG ++Q FL K LE LRK+F EL++ V++LMYIKEDLIIPHH++FYDFIVTKARGKSG
Sbjct: 218 KKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSG 277
Query: 188 PLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWDQYT 367
PLF FD DDVR++ DA+VEK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD+YT
Sbjct: 278 PLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYT 337
Query: 368 I 370
I
Sbjct: 338 I 338
>sp|Q14320|XAP5_HUMAN XAP-5 protein (HXC-26 protein)
Length = 339
Score = 196 bits (497), Expect = 2e-50
Identities = 89/121 (73%), Positives = 106/121 (87%)
Frame = +2
Query: 8 KKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARGKSG 187
+KG ++Q FL K LE LRK+F EL++ V++LMYIKEDLIIPHH++FYDFIVTKARGKSG
Sbjct: 218 RKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSG 277
Query: 188 PLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWDQYT 367
PLF FD DDVR++ DA+VEK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD+YT
Sbjct: 278 PLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYT 337
Query: 368 I 370
I
Sbjct: 338 I 338
>sp|Q9WTJ8|FA50B_MOUSE Protein FAM50B (XAP-5-like protein)
Length = 334
Score = 189 bits (479), Expect = 3e-48
Identities = 83/120 (69%), Positives = 104/120 (86%)
Frame = +2
Query: 11 KGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARGKSGP 190
KG ++Q FL + L+ LR++F EL+A V++LMY+KEDLI+PH++TFYDFIV KARGKSGP
Sbjct: 214 KGSTVQQFLKRALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTFYDFIVAKARGKSGP 273
Query: 191 LFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWDQYTI 370
LF FD DDVR++ DA++EK++SHAGKV LRSWYE+NKHIFPASRWEPYDP K WD+YTI
Sbjct: 274 LFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDRYTI 333
>sp|Q9Y247|XAP5L_HUMAN XAP-5-like protein
Length = 325
Score = 184 bits (468), Expect = 5e-47
Identities = 81/121 (66%), Positives = 104/121 (85%)
Frame = +2
Query: 8 KKGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIVTKARGKSG 187
+KG ++Q FL K L+ LRK+F EL++ V++LM+IKEDLI+PH++TFYDFI+ +ARGKSG
Sbjct: 204 RKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKSG 263
Query: 188 PLFLFDSRDDVRIMQDASVEKEDSHAGKVCLRSWYERNKHIFPASRWEPYDPLKNWDQYT 367
PLF FD DDVR++ DA++EK++SHAGKV LRSWYE+NKHIFPASRWE YDP K WD+YT
Sbjct: 264 PLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKYT 323
Query: 368 I 370
I
Sbjct: 324 I 324
>sp|Q5V4I4|GLPK_HALMA Glycerol kinase (ATP:glycerol 3-phosphotransferase) (Glycerokinase)
(GK)
Length = 510
Score = 30.8 bits (68), Expect = 1.3
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 260 HAGKVCLRSWYERNKHIFPASRWEPYDPLKNWD 358
H+G+V + YE+++ I+P W +DP++ W+
Sbjct: 23 HSGQVVANA-YEKHEQIYPEPGWVEHDPVEIWE 54
>sp|Q6MC72|AMPA_PARUW Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 499
Score = 30.4 bits (67), Expect = 1.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 32 FLSKCLEQLRKEFPELKATSVDKLMYIKEDL 124
+L+KC + L +E+P++K T DK KE +
Sbjct: 196 YLAKCAQGLSQEYPQIKTTVFDKKRLEKEQM 226
>sp|P57416|PYRC_BUCAI Dihydroorotase (DHOase)
Length = 350
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 12/48 (25%)
Frame = +2
Query: 32 FLSKCLEQLRKEFPELK-----ATSVDKLMYIKED-------LIIPHH 139
F+ K L+ LRK+FP+LK T+ + + YIK + I PHH
Sbjct: 157 FIEKTLDPLRKKFPKLKIVLEHITTKESVEYIKNNDVNYLSATITPHH 204
>sp|P42950|YJK3_YEAST Putative 70.4 kDa transcriptional regulatory protein in IME2-MEF2
intergenic region
Length = 618
Score = 29.6 bits (65), Expect = 2.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 11 KGYSIQVFLSKCLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDF--IVTKARGKS 184
K ++ ++ +K L LRK+F L+ +DK +K++ HN YD I+ +
Sbjct: 382 KPHNYKLAYTKLLTTLRKKF--LEGAEIDKSASVKDEHSTQKHNLRYDLEVIIRSILERY 439
Query: 185 GPLFL 199
P+F+
Sbjct: 440 APIFI 444
>sp|Q8K9L2|PYRC_BUCAP Dihydroorotase (DHOase)
Length = 349
Score = 29.6 bits (65), Expect = 2.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 12/48 (25%)
Frame = +2
Query: 32 FLSKCLEQLRKEFPELK-----ATSVDKLMYIKE-------DLIIPHH 139
F+ L+ LRK+FPELK T+ + + YI+E I PHH
Sbjct: 157 FIENTLKPLRKKFPELKIILEHITTEEAISYIEECNSSYLAGTITPHH 204
>sp|Q5ND56|FA57A_MOUSE Protein FAM57A
Length = 257
Score = 29.3 bits (64), Expect = 3.8
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 44 CLEQLRKEFPELKATSVDKLMYIKEDLIIPHHNTFYDFIV---TKARGKSGPLFL 199
C E+ R + +L T++ + I+ L++ HH F+V K RG G F+
Sbjct: 93 CCERCRTKSQKLTRTTIIRNFLIENRLMVTHHTVILLFLVPISQKLRGDLGDFFV 147
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,612,932
Number of Sequences: 369166
Number of extensions: 1119048
Number of successful extensions: 2980
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2979
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)