Planaria EST Database

DrC_00954

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00954
         (524 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NMD7|SYC1_CORGL  Cysteinyl-tRNA synthetase 1 (Cysteine-...    30   2.7  
sp|Q8FMI8|SYC1_COREF  Cysteinyl-tRNA synthetase 1 (Cysteine-...    30   2.7  
sp|Q6NFC3|SYC1_CORDI  Cysteinyl-tRNA synthetase 1 (Cysteine-...    30   3.5  
sp|Q5ZW91|HIS4_LEGPH  1-(5-phosphoribosyl)-5-[(5-phosphoribo...    30   4.6  
sp|Q5X5X3|HIS4_LEGPA  1-(5-phosphoribosyl)-5-[(5-phosphoribo...    30   4.6  
sp|Q07868|PBPB_BACSU  Penicillin-binding protein 2B (PBP-2B)       29   6.0  
sp|O81053|FUT2_ARATH  Probable fucosyltransferase 2 (AtFUT2)       29   6.0  
sp|P27655|SPIKE_CVPR8  Spike glycoprotein precursor (Peplome...    29   7.9  
sp|P24413|SPIKE_CVPRM  Spike glycoprotein precursor (Peplome...    29   7.9  

>sp|Q8NMD7|SYC1_CORGL Cysteinyl-tRNA synthetase 1 (Cysteine--tRNA ligase 1) (CysRS 1)
          Length = 460

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 127 GFHRMNKTIGTMLLFYHMKIHCNLLDLQYDDHPNEL 20
           G+H     + T  L     IHC  LDLQ+  H NE+
Sbjct: 207 GWHLECSAMATYYLGEQFDIHCGGLDLQFPHHENEI 242

>sp|Q8FMI8|SYC1_COREF Cysteinyl-tRNA synthetase 1 (Cysteine--tRNA ligase 1) (CysRS 1)
          Length = 459

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 127 GFHRMNKTIGTMLLFYHMKIHCNLLDLQYDDHPNEL 20
           G+H     + T  L     IHC  LDLQ+  H NE+
Sbjct: 207 GWHLECSAMATYYLGAEFDIHCGGLDLQFPHHENEI 242

>sp|Q6NFC3|SYC1_CORDI Cysteinyl-tRNA synthetase 1 (Cysteine--tRNA ligase 1) (CysRS 1)
          Length = 463

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 127 GFHRMNKTIGTMLLFYHMKIHCNLLDLQYDDHPNEL 20
           G+H     + T  L     IHC  LDLQ+  H NE+
Sbjct: 207 GWHLECSAMATWYLGGEFDIHCGGLDLQFPHHENEI 242

>sp|Q5ZW91|HIS4_LEGPH 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 239

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 211 SSPAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPHLAVPDVKHFPK 360
           S+ + W +  Y+ N+G     CTD  I  DG+M   +  L    V++FP+
Sbjct: 148 STSSLWEVVSYYENYGIKNILCTD--IACDGMMNGPNFDLYQQAVEYFPQ 195

>sp|Q5X5X3|HIS4_LEGPA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 239

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 211 SSPAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPHLAVPDVKHFPK 360
           S+ + W +  Y+ N+G     CTD  I  DG+M   +  L    V++FP+
Sbjct: 148 STSSLWEVVSYYENYGIKNILCTD--IACDGMMNGPNFDLYQQAVEYFPQ 195

>sp|Q07868|PBPB_BACSU Penicillin-binding protein 2B (PBP-2B)
          Length = 716

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 145 GPAEIYNGTMRRQNLLDDNILKSSPAFWRINQYHSNFGDYRAECTDVNIKGD 300
           GP   ++G +R  N+    + K    + R+NQY   F  Y+   T +++ G+
Sbjct: 356 GPTTYHDGVLRSSNVAFAKLAKEKLGYDRLNQYLHKFNFYQK--TGIDLPGE 405

>sp|O81053|FUT2_ARATH Probable fucosyltransferase 2 (AtFUT2)
          Length = 539

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
 Frame = +1

Query: 217 PAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPHLAVPDVKHFPKPICND------- 375
           P  + +    S FG   A C      GD L        +V  + H    + +D       
Sbjct: 201 PKDFTLASQFSGFGQNSAHC-----HGDMLKRKLINESSVSSLSHLYLHLAHDYNEHDKM 255

Query: 376 --CQVDNATLNNTPWVILRDNYLNKPA 450
             C+ D   L N PW+I+R N    P+
Sbjct: 256 FFCEEDQNLLKNVPWLIMRTNNFFAPS 282

>sp|P27655|SPIKE_CVPR8 Spike glycoprotein precursor (Peplomer protein) (E2)
          Length = 1225

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
 Frame = +1

Query: 67  EFSCDKKEALCQSFCSFYEIPARRNPGPA---EIYNGT-MRRQNLLDDNILKSSPAFW-- 228
           E SC        SF S+ EIP     GP     +YNGT ++    L  ++ + + + W  
Sbjct: 146 EISCYNDTVSDSSFSSYGEIPFGVTNGPRYCYVLYNGTALKYLGTLPPSVKEIAISKWGH 205

Query: 229 -RINQYHSNFGDYRAECTDVNI-KGDGLMIPTHPHLAVPDVKHFPKPICNDCQVDNATLN 402
             IN Y+  F  +  +C   N+  GD  +  T  + +  +            QV+N  + 
Sbjct: 206 FYINGYNF-FSTFPIDCISFNLTTGDSDVFWTIAYTSYTEAL---------VQVENTAIT 255

Query: 403 NTPWVILRDNYLNKPACS 456
           N  +    ++Y+N   CS
Sbjct: 256 NVTYC---NSYVNNIKCS 270

>sp|P24413|SPIKE_CVPRM Spike glycoprotein precursor (Peplomer protein) (E2)
          Length = 1225

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
 Frame = +1

Query: 67  EFSCDKKEALCQSFCSFYEIPARRNPGPA---EIYNGT-MRRQNLLDDNILKSSPAFW-- 228
           E SC        SF S+ EIP     GP     +YNGT ++    L  ++ + + + W  
Sbjct: 146 EISCYNDTVSDSSFSSYGEIPFGVTNGPRYCYVLYNGTALKYLGTLPPSVKEIAISKWGH 205

Query: 229 -RINQYHSNFGDYRAECTDVNI-KGDGLMIPTHPHLAVPDVKHFPKPICNDCQVDNATLN 402
             IN Y+  F  +  +C   N+  GD  +  T  + +  +            QV+N  + 
Sbjct: 206 FYINGYNF-FSTFPIDCISFNLTTGDSDVFWTIAYTSYTEAL---------VQVENTAIT 255

Query: 403 NTPWVILRDNYLNKPACS 456
           N  +    ++Y+N   CS
Sbjct: 256 NVTYC---NSYVNNIKCS 270

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,462,617
Number of Sequences: 369166
Number of extensions: 1274872
Number of successful extensions: 2747
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2747
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00954

  1. Dr_sW_024_C19
  2. Dr_sW_013_C06