Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_C06
(490 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZW91|HIS4_LEGPH 1-(5-phosphoribosyl)-5-[(5-phosphoribo... 30 3.9
sp|Q5X5X3|HIS4_LEGPA 1-(5-phosphoribosyl)-5-[(5-phosphoribo... 30 3.9
sp|Q07868|PBPB_BACSU Penicillin-binding protein 2B (PBP-2B) 29 5.1
sp|O81053|FUT2_ARATH Probable fucosyltransferase 2 (AtFUT2) 29 5.1
sp|P27655|SPIKE_CVPR8 Spike glycoprotein precursor (Peplome... 29 6.7
sp|P24413|SPIKE_CVPRM Spike glycoprotein precursor (Peplome... 29 6.7
sp|P19468|GSH1_RAT Glutamate--cysteine ligase catalytic sub... 28 8.8
sp|Q9VLA2|GCM2_DROME Transcription factor glial cells missi... 28 8.8
>sp|Q5ZW91|HIS4_LEGPH 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase
(Phosphoribosylformimino-5-aminoimidazole carboxamide
ribotide isomerase)
Length = 239
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 179 SSPAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPHLAVPDVKHFPK 328
S+ + W + Y+ N+G CTD I DG+M + L V++FP+
Sbjct: 148 STSSLWEVVSYYENYGIKNILCTD--IACDGMMNGPNFDLYQQAVEYFPQ 195
>sp|Q5X5X3|HIS4_LEGPA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase
(Phosphoribosylformimino-5-aminoimidazole carboxamide
ribotide isomerase)
Length = 239
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 179 SSPAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPHLAVPDVKHFPK 328
S+ + W + Y+ N+G CTD I DG+M + L V++FP+
Sbjct: 148 STSSLWEVVSYYENYGIKNILCTD--IACDGMMNGPNFDLYQQAVEYFPQ 195
>sp|Q07868|PBPB_BACSU Penicillin-binding protein 2B (PBP-2B)
Length = 716
Score = 29.3 bits (64), Expect = 5.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 113 GPAEIYNGTMRRQNLLDDNILKSSPAFWRINQYHSNFGDYRAECTDVNIKGD 268
GP ++G +R N+ + K + R+NQY F Y+ T +++ G+
Sbjct: 356 GPTTYHDGVLRSSNVAFAKLAKEKLGYDRLNQYLHKFNFYQK--TGIDLPGE 405
>sp|O81053|FUT2_ARATH Probable fucosyltransferase 2 (AtFUT2)
Length = 539
Score = 29.3 bits (64), Expect = 5.1
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Frame = +2
Query: 185 PAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPHLAVPDVKHFPKPICND------- 343
P + + S FG A C GD L +V + H + +D
Sbjct: 201 PKDFTLASQFSGFGQNSAHC-----HGDMLKRKLINESSVSSLSHLYLHLAHDYNEHDKM 255
Query: 344 --CQVDNATLNNTPWVILRDNYLNKPA 418
C+ D L N PW+I+R N P+
Sbjct: 256 FFCEEDQNLLKNVPWLIMRTNNFFAPS 282
>sp|P27655|SPIKE_CVPR8 Spike glycoprotein precursor (Peplomer protein) (E2)
Length = 1225
Score = 28.9 bits (63), Expect = 6.7
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Frame = +2
Query: 35 EFSCDKKEALCQSFCSFYEIPARRNPGPA---EIYNGT-MRRQNLLDDNILKSSPAFW-- 196
E SC SF S+ EIP GP +YNGT ++ L ++ + + + W
Sbjct: 146 EISCYNDTVSDSSFSSYGEIPFGVTNGPRYCYVLYNGTALKYLGTLPPSVKEIAISKWGH 205
Query: 197 -RINQYHSNFGDYRAECTDVNI-KGDGLMIPTHPHLAVPDVKHFPKPICNDCQVDNATLN 370
IN Y+ F + +C N+ GD + T + + + QV+N +
Sbjct: 206 FYINGYNF-FSTFPIDCISFNLTTGDSDVFWTIAYTSYTEAL---------VQVENTAIT 255
Query: 371 NTPWVILRDNYLNKPACS 424
N + ++Y+N CS
Sbjct: 256 NVTYC---NSYVNNIKCS 270
>sp|P24413|SPIKE_CVPRM Spike glycoprotein precursor (Peplomer protein) (E2)
Length = 1225
Score = 28.9 bits (63), Expect = 6.7
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Frame = +2
Query: 35 EFSCDKKEALCQSFCSFYEIPARRNPGPA---EIYNGT-MRRQNLLDDNILKSSPAFW-- 196
E SC SF S+ EIP GP +YNGT ++ L ++ + + + W
Sbjct: 146 EISCYNDTVSDSSFSSYGEIPFGVTNGPRYCYVLYNGTALKYLGTLPPSVKEIAISKWGH 205
Query: 197 -RINQYHSNFGDYRAECTDVNI-KGDGLMIPTHPHLAVPDVKHFPKPICNDCQVDNATLN 370
IN Y+ F + +C N+ GD + T + + + QV+N +
Sbjct: 206 FYINGYNF-FSTFPIDCISFNLTTGDSDVFWTIAYTSYTEAL---------VQVENTAIT 255
Query: 371 NTPWVILRDNYLNKPACS 424
N + ++Y+N CS
Sbjct: 256 NVTYC---NSYVNNIKCS 270
>sp|P19468|GSH1_RAT Glutamate--cysteine ligase catalytic subunit
(Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS
heavy chain)
Length = 637
Score = 28.5 bits (62), Expect = 8.8
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +2
Query: 116 PAEIYNGTMRRQNLLDDNILKSSPAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPH 295
P + Y GTM N ++DN+ K R + S G+++A CT I + P
Sbjct: 106 PGQPYGGTMSEFNTVEDNMRK------RRKEATSVLGEHQALCT----------ITSFPR 149
Query: 296 LAVPDV---KHFPKP 331
L P +H P P
Sbjct: 150 LGCPGFTLPEHRPNP 164
>sp|Q9VLA2|GCM2_DROME Transcription factor glial cells missing 2 (Glide2 protein)
Length = 613
Score = 28.5 bits (62), Expect = 8.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 89 EIPARRNPGPAEIYNGTMRRQNLLDDN--ILKSSPAFWRINQYH 214
EI + PGP YN T+ Q ++DN S A + + Q+H
Sbjct: 444 EISCKAEPGPTIKYNATVETQPYVEDNYDYYYSPKAEYEMQQHH 487
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,983,165
Number of Sequences: 369166
Number of extensions: 1184088
Number of successful extensions: 2502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)