Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C19
(523 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NMD7|SYC1_CORGL Cysteinyl-tRNA synthetase 1 (Cysteine-... 30 2.7
sp|Q8FMI8|SYC1_COREF Cysteinyl-tRNA synthetase 1 (Cysteine-... 30 2.7
sp|Q6NFC3|SYC1_CORDI Cysteinyl-tRNA synthetase 1 (Cysteine-... 30 3.5
sp|Q5ZW91|HIS4_LEGPH 1-(5-phosphoribosyl)-5-[(5-phosphoribo... 30 4.6
sp|Q5X5X3|HIS4_LEGPA 1-(5-phosphoribosyl)-5-[(5-phosphoribo... 30 4.6
sp|Q07868|PBPB_BACSU Penicillin-binding protein 2B (PBP-2B) 29 6.0
>sp|Q8NMD7|SYC1_CORGL Cysteinyl-tRNA synthetase 1 (Cysteine--tRNA ligase 1) (CysRS 1)
Length = 460
Score = 30.4 bits (67), Expect = 2.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 127 GFHRMNKTIGTMLLFYHMKIHCNLLDLQYDDHPNEL 20
G+H + T L IHC LDLQ+ H NE+
Sbjct: 207 GWHLECSAMATYYLGEQFDIHCGGLDLQFPHHENEI 242
>sp|Q8FMI8|SYC1_COREF Cysteinyl-tRNA synthetase 1 (Cysteine--tRNA ligase 1) (CysRS 1)
Length = 459
Score = 30.4 bits (67), Expect = 2.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 127 GFHRMNKTIGTMLLFYHMKIHCNLLDLQYDDHPNEL 20
G+H + T L IHC LDLQ+ H NE+
Sbjct: 207 GWHLECSAMATYYLGAEFDIHCGGLDLQFPHHENEI 242
>sp|Q6NFC3|SYC1_CORDI Cysteinyl-tRNA synthetase 1 (Cysteine--tRNA ligase 1) (CysRS 1)
Length = 463
Score = 30.0 bits (66), Expect = 3.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 127 GFHRMNKTIGTMLLFYHMKIHCNLLDLQYDDHPNEL 20
G+H + T L IHC LDLQ+ H NE+
Sbjct: 207 GWHLECSAMATWYLGGEFDIHCGGLDLQFPHHENEI 242
>sp|Q5ZW91|HIS4_LEGPH 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase
(Phosphoribosylformimino-5-aminoimidazole carboxamide
ribotide isomerase)
Length = 239
Score = 29.6 bits (65), Expect = 4.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 211 SSPAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPHLAVPDVKHFPK 360
S+ + W + Y+ N+G CTD I DG+M + L V++FP+
Sbjct: 148 STSSLWEVVSYYENYGIKNILCTD--IACDGMMNGPNFDLYQQAVEYFPQ 195
>sp|Q5X5X3|HIS4_LEGPA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase
(Phosphoribosylformimino-5-aminoimidazole carboxamide
ribotide isomerase)
Length = 239
Score = 29.6 bits (65), Expect = 4.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 211 SSPAFWRINQYHSNFGDYRAECTDVNIKGDGLMIPTHPHLAVPDVKHFPK 360
S+ + W + Y+ N+G CTD I DG+M + L V++FP+
Sbjct: 148 STSSLWEVVSYYENYGIKNILCTD--IACDGMMNGPNFDLYQQAVEYFPQ 195
>sp|Q07868|PBPB_BACSU Penicillin-binding protein 2B (PBP-2B)
Length = 716
Score = 29.3 bits (64), Expect = 6.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 145 GPAEIYNGTMRRQNLLDDNILKSSPAFWRINQYHSNFGDYRAECTDVNIKGD 300
GP ++G +R N+ + K + R+NQY F Y+ T +++ G+
Sbjct: 356 GPTTYHDGVLRSSNVAFAKLAKEKLGYDRLNQYLHKFNFYQK--TGIDLPGE 405
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,171,027
Number of Sequences: 369166
Number of extensions: 1243763
Number of successful extensions: 2631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2630
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)