Planaria EST Database

DrC_00949

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00949
         (981 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q59061|YG67_METJA  Hypothetical protein MJ1667                  33   0.94 
sp|O07684|BGAL_LACAC  Beta-galactosidase large subunit (Lact...    32   2.1  
sp|Q9QY06|MYO9B_MOUSE  Myosin-9B (Myosin IXb) (Unconventiona...    31   6.1  
sp|Q7WTB4|BGAL_LACHE  Beta-galactosidase large subunit (Lact...    30   8.0  
sp|Q88B06|CYAY_PSESM  CyaY protein                                 30   8.0  

>sp|Q59061|YG67_METJA Hypothetical protein MJ1667
          Length = 418

 Score = 33.5 bits (75), Expect = 0.94
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
 Frame = +1

Query: 175 SLVFQGI-VRNQKYRH-----VKSETTVKLIRGYELPAGTAAIAINQYTRMNENSFWYES 336
           +L+ + I + NQ Y H     +  E   +LI    +  G       +Y++++    ++  
Sbjct: 23  NLIIRSIPMENQYYSHLIQRGITMEVKCELITPIFIGCG------EEYSQLD----YFIE 72

Query: 337 DGIIHRCDSEFEISDLDYLETTD-LHGFVVDSLKSGRL 447
           DG+ H  D E  +SDLD LE  D + G +V ++ + RL
Sbjct: 73  DGLAHIIDLEKAVSDLDDLEKVDYISGLIVSNIDNNRL 110

>sp|O07684|BGAL_LACAC Beta-galactosidase large subunit (Lactase)
          Length = 628

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +1

Query: 211 YRHVKSETTVKLIR-GYELPAGTAAIAINQYTRMNENSFWYESDGIIHRCDSEFEISDLD 387
           Y   K+ T++     G E  AG+  +A+N++ + +++S     +G++HR + + +ISD++
Sbjct: 451 YETFKNHTSILFWSLGNESYAGSNIVAMNEFYKEHDSSRLVHYEGVVHRPELKDQISDIE 510

>sp|Q9QY06|MYO9B_MOUSE Myosin-9B (Myosin IXb) (Unconventional myosin-9b)
          Length = 2114

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +1

Query: 547 FKRQEFYSFITMQMISGNEIREIPIKCWKWGFQFDYDKQARRETHEITLSEMTGEAMLEV 726
           F +Q+ Y++    +++ N  + +PI   K+   ++  +  + E H   L+++   AML  
Sbjct: 170 FMQQKIYTYAGSILVAINPFKFLPIYNPKYVKMYENQQLGKLEPHVFALADVAYYAMLRK 229

Query: 727 FGNLRRICKGDNANKRLKRHN--ISMLDLFNTDGYRS 831
             N   +  G++ + + +  N  I  L   +  GY S
Sbjct: 230 HVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYAS 266

>sp|Q7WTB4|BGAL_LACHE Beta-galactosidase large subunit (Lactase)
          Length = 628

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +1

Query: 211 YRHVKSETTVKLIR-GYELPAGTAAIAINQYTRMNENSFWYESDGIIHRCDSEFEISDLD 387
           Y   K+ T++     G E  AG   IA+N++ + ++++     +G++HR + + +ISD++
Sbjct: 451 YETFKNHTSILFWSLGNESYAGDNIIAMNEFYKSHDDTRLVHYEGVVHRPELKDKISDVE 510

>sp|Q88B06|CYAY_PSESM CyaY protein
          Length = 110

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = +1

Query: 448 FYEAISAEELNLERSRVFSDEPSIQTDKEIVKMFKRQEFYSFITMQMISGNEIREIPIKC 627
           F++ + A + N+E   VF DE  +  D E        +F     +       +R++ +  
Sbjct: 8   FHDLVDATQQNIED--VF-DESGLDVDLENSAGVLTVKFEGGSQLIFSRQEPLRQLWLAA 64

Query: 628 WKWGFQFDYDKQARR---ETHEITLSEMTGEAMLEVFG 732
              GF FDYD++  R   +T +  LSEM      E  G
Sbjct: 65  KSGGFHFDYDEEESRWACDTSDELLSEMLARMTFEQAG 102

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,077,267
Number of Sequences: 369166
Number of extensions: 2238932
Number of successful extensions: 5630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5630
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10287619925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00949

  1. Dr_sW_024_A09
  2. Dr_sW_018_M17