Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A09
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q59061|YG67_METJA Hypothetical protein MJ1667 33 0.76
sp|Q16890|TPD53_HUMAN Tumor protein D53 (hD53) (Tumor prote... 33 1.00
sp|O54818|TPD53_MOUSE Tumor protein D53 (mD53) (Tumor prote... 33 1.3
sp|Q9QY06|MYO9B_MOUSE Myosin-9B (Myosin IXb) (Unconventiona... 33 1.3
sp|O07684|BGAL_LACAC Beta-galactosidase large subunit (Lact... 32 1.7
sp|Q63358|MYO9B_RAT Myosin-9B (Myosin IXb) (Unconventional ... 31 5.0
sp|Q7WTB4|BGAL_LACHE Beta-galactosidase large subunit (Lact... 30 6.5
sp|Q88B06|CYAY_PSESM CyaY protein 30 6.5
sp|Q13459|MYO9B_HUMAN Myosin-9B (Myosin IXb) (Unconventiona... 30 6.5
sp|Q9BPS0|VIT2_PERAM Vitellogenin 2 precursor (Vg-2) 30 8.4
>sp|Q59061|YG67_METJA Hypothetical protein MJ1667
Length = 418
Score = 33.5 bits (75), Expect = 0.76
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Frame = +1
Query: 175 SLVFQGI-VRNQKYRH-----VKSETTVKLIRGYELPAGTAAIAINQYTRMNENSFWYES 336
+L+ + I + NQ Y H + E +LI + G +Y++++ ++
Sbjct: 23 NLIIRSIPMENQYYSHLIQRGITMEVKCELITPIFIGCG------EEYSQLD----YFIE 72
Query: 337 DGIIHRCDSEFEISDLDYLETTD-LHGFVVDSLKSGRL 447
DG+ H D E +SDLD LE D + G +V ++ + RL
Sbjct: 73 DGLAHIIDLEKAVSDLDDLEKVDYISGLIVSNIDNNRL 110
>sp|Q16890|TPD53_HUMAN Tumor protein D53 (hD53) (Tumor protein D52-like 1)
Length = 204
Score = 33.1 bits (74), Expect = 1.00
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 4/155 (2%)
Frame = +1
Query: 391 LETTDLHGFVVDSLKSGRLFYEAISAEELNLERSRVFSDEPSIQTDKEIVKMFKRQEFYS 570
LET L G D++ S F +S EE ++ + E I T ++++ +R
Sbjct: 9 LETEPLQGTDEDAVASAD-FSSMLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEI 67
Query: 571 FITMQMISGNEIREIPIKCWKWGFQFDYDKQ---ARRETHEITLSEMTGEAMLEVFGNL- 738
+ M NE+++ K W +D Q A ++THE TLS G+ F N+
Sbjct: 68 KQKLGMNLMNELKQNFSKSW-------HDMQTTTAYKKTHE-TLSH-AGQKATAAFSNVG 118
Query: 739 RRICKGDNANKRLKRHNISMLDLFNTDGYRSTEKR 843
I K RH+ISM + N+ ++S E+R
Sbjct: 119 TAISKKFGDMSYSIRHSISMPAMRNSPTFKSFEER 153
>sp|O54818|TPD53_MOUSE Tumor protein D53 (mD53) (Tumor protein D52-like 1)
Length = 204
Score = 32.7 bits (73), Expect = 1.3
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 4/155 (2%)
Frame = +1
Query: 391 LETTDLHGFVVDSLKSGRLFYEAISAEELNLERSRVFSDEPSIQTDKEIVKMFKRQEFYS 570
LET L G D++ S F +S EE ++ + E I T ++++ +R
Sbjct: 9 LETEPLQGRDGDAVGSAD-FSSMLSEEEKEELKAELIQLEDEITTLRQVLSAKERHLVEI 67
Query: 571 FITMQMISGNEIREIPIKCWKWGFQFDYDKQ---ARRETHEITLSEMTGEAMLEVFGNLR 741
+ M NE+++ + W +D Q A ++THE TLS G+ F N+
Sbjct: 68 KQKLGMNLMNELKQNFSRSW-------HDMQTTTAYKKTHE-TLSH-AGQKATAAFNNVG 118
Query: 742 RICKGDNANKRLK-RHNISMLDLFNTDGYRSTEKR 843
+ R RH+ISM + N+ ++S E+R
Sbjct: 119 TAISKKFGDMRYSIRHSISMPAMRNSSTFKSFEER 153
>sp|Q9QY06|MYO9B_MOUSE Myosin-9B (Myosin IXb) (Unconventional myosin-9b)
Length = 2114
Score = 32.7 bits (73), Expect = 1.3
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +1
Query: 547 FKRQEFYSFITMQMISGNEIREIPIKCWKWGFQFDYDKQARRETHEITLSEMTGEAMLEV 726
F +Q+ Y++ +++ N + +PI K+ ++ + + E H L+++ AML
Sbjct: 170 FMQQKIYTYAGSILVAINPFKFLPIYNPKYVKMYENQQLGKLEPHVFALADVAYYAMLRK 229
Query: 727 FGNLRRICKGDNANKRLKRHN--ISMLDLFNTDGYRSTEKRRI 849
N + G++ + + + N I L + GY S +R I
Sbjct: 230 HVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYASGVERTI 272
>sp|O07684|BGAL_LACAC Beta-galactosidase large subunit (Lactase)
Length = 628
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 211 YRHVKSETTVKLIR-GYELPAGTAAIAINQYTRMNENSFWYESDGIIHRCDSEFEISDLD 387
Y K+ T++ G E AG+ +A+N++ + +++S +G++HR + + +ISD++
Sbjct: 451 YETFKNHTSILFWSLGNESYAGSNIVAMNEFYKEHDSSRLVHYEGVVHRPELKDQISDIE 510
>sp|Q63358|MYO9B_RAT Myosin-9B (Myosin IXb) (Unconventional myosin-9b)
Length = 1980
Score = 30.8 bits (68), Expect = 5.0
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = +1
Query: 547 FKRQEFYSFITMQMISGNEIREIPIKCWKWGFQFDYDKQARRETHEITLSEMTGEAMLEV 726
F +Q+ Y++ +++ N + +PI K+ ++ + + E H L+++ ML
Sbjct: 170 FVQQKIYTYAGSILVAINPFKFLPIYNPKYVKMYENQQLGKLEPHVFALADVAYYTMLRK 229
Query: 727 FGNLRRICKGDNANKRLKRHN--ISMLDLFNTDGYRSTEKRRI 849
N + G++ + + + N I L + GY S +R I
Sbjct: 230 HVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYASGVERTI 272
>sp|Q7WTB4|BGAL_LACHE Beta-galactosidase large subunit (Lactase)
Length = 628
Score = 30.4 bits (67), Expect = 6.5
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 211 YRHVKSETTVKLIR-GYELPAGTAAIAINQYTRMNENSFWYESDGIIHRCDSEFEISDLD 387
Y K+ T++ G E AG IA+N++ + ++++ +G++HR + + +ISD++
Sbjct: 451 YETFKNHTSILFWSLGNESYAGDNIIAMNEFYKSHDDTRLVHYEGVVHRPELKDKISDVE 510
>sp|Q88B06|CYAY_PSESM CyaY protein
Length = 110
Score = 30.4 bits (67), Expect = 6.5
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +1
Query: 448 FYEAISAEELNLERSRVFSDEPSIQTDKEIVKMFKRQEFYSFITMQMISGNEIREIPIKC 627
F++ + A + N+E VF DE + D E +F + +R++ +
Sbjct: 8 FHDLVDATQQNIED--VF-DESGLDVDLENSAGVLTVKFEGGSQLIFSRQEPLRQLWLAA 64
Query: 628 WKWGFQFDYDKQARR---ETHEITLSEMTGEAMLEVFG 732
GF FDYD++ R +T + LSEM E G
Sbjct: 65 KSGGFHFDYDEEESRWACDTSDELLSEMLARMTFEQAG 102
>sp|Q13459|MYO9B_HUMAN Myosin-9B (Myosin IXb) (Unconventional myosin-9b)
Length = 2158
Score = 30.4 bits (67), Expect = 6.5
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +1
Query: 529 KEIVKMFKRQEFYSFITMQMISGNEIREIPIKCWKWGFQFDYDKQARRETHEITLSEMTG 708
K + F +Q+ Y++ +++ N + +PI K+ ++ + + E H L+++
Sbjct: 164 KNLKHRFLQQKIYTYAGSILVAINPFKFLPIYNPKYVKMYENQQLGKLEPHVFALADVAY 223
Query: 709 EAMLEVFGNLRRICKGDNANKRLKRHN--ISMLDLFNTDGYRSTEKRRI 849
ML N + G++ + + + N I L + GY S +R I
Sbjct: 224 YTMLRKRVNQCIVYPGESGSGKTQSTNFLIHCLTALSQKGYASGVERTI 272
>sp|Q9BPS0|VIT2_PERAM Vitellogenin 2 precursor (Vg-2)
Length = 1876
Score = 30.0 bits (66), Expect = 8.4
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Frame = +1
Query: 349 HRCDSEFEISDLDYLETTD-------LHGFVVDSLKSGRLFYEAIS----AEELNLERSR 495
HR E + L+ LE +D L+ V+ ++++GRL+Y ++S EE +
Sbjct: 1222 HRRSRHEERAPLENLEVSDTETQREELYDIVLPAVRAGRLYYASVSVAFKGEENVYSKYE 1281
Query: 496 VFSDEPSIQTDKEIVKMFK-------RQEFYSFITMQMISGNEIREIPIKCWKWGFQFDY 654
V S Q ++ I M + R+ Y+ + + + + ++P+ ++ +FD
Sbjct: 1282 VEGALASSQVNEHISTMLRAHSNDAERKHQYAHVRVNV----TMPQVPVIDYRKALEFDP 1337
Query: 655 DKQARRETH 681
+ + E H
Sbjct: 1338 TSKIQCEVH 1346
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,516,241
Number of Sequences: 369166
Number of extensions: 1995017
Number of successful extensions: 5187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5187
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)