Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_M17
(961 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q59061|YG67_METJA Hypothetical protein MJ1667 33 0.91
sp|O07684|BGAL_LACAC Beta-galactosidase large subunit (Lact... 32 2.0
sp|Q9QY06|MYO9B_MOUSE Myosin-9B (Myosin IXb) (Unconventiona... 31 5.9
sp|Q7WTB4|BGAL_LACHE Beta-galactosidase large subunit (Lact... 30 7.7
sp|Q88B06|CYAY_PSESM CyaY protein 30 7.7
>sp|Q59061|YG67_METJA Hypothetical protein MJ1667
Length = 418
Score = 33.5 bits (75), Expect = 0.91
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Frame = +2
Query: 155 SLVFQGI-VRNQKYRH-----VKSETTVKLIRGYELPAGTAAIAINQYTRMNENSFWYES 316
+L+ + I + NQ Y H + E +LI + G +Y++++ ++
Sbjct: 23 NLIIRSIPMENQYYSHLIQRGITMEVKCELITPIFIGCG------EEYSQLD----YFIE 72
Query: 317 DGIIHRCDSEFEISDLDYLETTD-LHGFVVDSLKSGRL 427
DG+ H D E +SDLD LE D + G +V ++ + RL
Sbjct: 73 DGLAHIIDLEKAVSDLDDLEKVDYISGLIVSNIDNNRL 110
>sp|O07684|BGAL_LACAC Beta-galactosidase large subunit (Lactase)
Length = 628
Score = 32.3 bits (72), Expect = 2.0
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 191 YRHVKSETTVKLIR-GYELPAGTAAIAINQYTRMNENSFWYESDGIIHRCDSEFEISDLD 367
Y K+ T++ G E AG+ +A+N++ + +++S +G++HR + + +ISD++
Sbjct: 451 YETFKNHTSILFWSLGNESYAGSNIVAMNEFYKEHDSSRLVHYEGVVHRPELKDQISDIE 510
>sp|Q9QY06|MYO9B_MOUSE Myosin-9B (Myosin IXb) (Unconventional myosin-9b)
Length = 2114
Score = 30.8 bits (68), Expect = 5.9
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +2
Query: 527 FKRQEFYSFITMQMISGNEIREIPIKCWKWGFQFDYDKQARRETHEITLSEMTGEAMLEV 706
F +Q+ Y++ +++ N + +PI K+ ++ + + E H L+++ AML
Sbjct: 170 FMQQKIYTYAGSILVAINPFKFLPIYNPKYVKMYENQQLGKLEPHVFALADVAYYAMLRK 229
Query: 707 FGNLRRICKGDNANKRLKRHN--ISMLDLFNTDGYRS 811
N + G++ + + + N I L + GY S
Sbjct: 230 HVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYAS 266
>sp|Q7WTB4|BGAL_LACHE Beta-galactosidase large subunit (Lactase)
Length = 628
Score = 30.4 bits (67), Expect = 7.7
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 191 YRHVKSETTVKLIR-GYELPAGTAAIAINQYTRMNENSFWYESDGIIHRCDSEFEISDLD 367
Y K+ T++ G E AG IA+N++ + ++++ +G++HR + + +ISD++
Sbjct: 451 YETFKNHTSILFWSLGNESYAGDNIIAMNEFYKSHDDTRLVHYEGVVHRPELKDKISDVE 510
>sp|Q88B06|CYAY_PSESM CyaY protein
Length = 110
Score = 30.4 bits (67), Expect = 7.7
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +2
Query: 428 FYEAISAEELNLERSRVFSDEPSIQTDKEIVKMFKRQEFYSFITMQMISGNEIREIPIKC 607
F++ + A + N+E VF DE + D E +F + +R++ +
Sbjct: 8 FHDLVDATQQNIED--VF-DESGLDVDLENSAGVLTVKFEGGSQLIFSRQEPLRQLWLAA 64
Query: 608 WKWGFQFDYDKQARR---ETHEITLSEMTGEAMLEVFG 712
GF FDYD++ R +T + LSEM E G
Sbjct: 65 KSGGFHFDYDEEESRWACDTSDELLSEMLARMTFEQAG 102
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,288,595
Number of Sequences: 369166
Number of extensions: 2200277
Number of successful extensions: 5551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5551
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9952674160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)