Planaria EST Database

DrC_00947

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00947
         (415 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BSY1|MAD1_DEBHA  Spindle assembly checkpoint component ...    32   0.39 
sp|Q6BZE9|SNX4_DEBHA  Sorting nexin-4 (Autophagy-related pro...    31   0.86 
sp|P95949|HELX_SULSO  Putative ATP-dependent helicase SSO0112      30   2.5  
sp|Q6P5D4|CEP4_MOUSE  Centrosomal protein 4 (Centrosomal pro...    29   3.3  
sp|Q8XV02|YU30_RALSO  Hypothetical UPF0192 protein RSc3030 p...    28   7.3  
sp|Q00107|VG67_ICHV1  Hypothetical gene 67 protein                 28   7.3  

>sp|Q6BSY1|MAD1_DEBHA Spindle assembly checkpoint component MAD1 (Mitotic arrest
           deficient protein 1)
          Length = 669

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 98  EYSTKYTHEDSL---CLVEIQTGDEDITNQQDHVLNQQYYLQKKFRHFCILTDNLSSDIE 268
           E  +KY +   +    +  +Q   +DIT + D +  +  YL   F+ FC   + + SD+E
Sbjct: 84  ELQSKYDNSQQINGKTVESLQVQLKDITERYDELKEEHEYLNSDFKKFCRDNNQVKSDLE 143

Query: 269 LDI 277
             I
Sbjct: 144 FHI 146

>sp|Q6BZE9|SNX4_DEBHA Sorting nexin-4 (Autophagy-related protein 24)
          Length = 582

 Score = 31.2 bits (69), Expect = 0.86
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +2

Query: 53  DTDVANLKEIQSILTEYSTKYTHEDSLCLVEIQTGDEDIT-----NQQDHVLNQ 199
           D D   L E ++I  +  TK  +E +  L+  +TGDE+I+     N+ DH++ +
Sbjct: 46  DNDTTKLNEPENIQEDDETKDDNEPTDSLILSKTGDENISNIESQNEGDHIVGE 99

>sp|P95949|HELX_SULSO Putative ATP-dependent helicase SSO0112
          Length = 875

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
 Frame = +2

Query: 5   GSVHKHFCAQISENSPDTDVANLKEIQSILTEY--STKYTHEDSLCLVEIQTGDEDITNQ 178
           G  H      IS+       A++     IL +Y  +      D+L L+EI   +E I N 
Sbjct: 599 GVTHNEIIESISKEYEIDKHASMSIYTYILEQYLFTNGKVPSDNLILIEIYDDEEGIRNY 658

Query: 179 QDHVLNQQYYLQKKFRHFC-ILTDNLSSDIELDIGFLSTNGVAV 307
             H L  +  L    R F  ++++ L +D+ + +   + NG A+
Sbjct: 659 IFHALYGRRALDALSRAFAYVVSEELDTDVRVSV---TDNGFAL 699

>sp|Q6P5D4|CEP4_MOUSE Centrosomal protein 4 (Centrosomal protein of 135 kDa) (Cep135
            protein)
          Length = 1140

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +2

Query: 17   KHFCAQISENSPDTDVANLKEIQSILTEYSTKYTHEDSLCLVEIQTGDEDITNQQDHVLN 196
            K F + ++ +  DT++  LKE  ++     T  + E S+   ++     D  N +  + N
Sbjct: 1043 KEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSN 1102

Query: 197  QQYYLQK---KFRHFCILTDNLSSDIE 268
            ++Y  ++   + R   + T  LSS ++
Sbjct: 1103 EKYERERAIQEMRRLGLPTSPLSSTLK 1129

>sp|Q8XV02|YU30_RALSO Hypothetical UPF0192 protein RSc3030 precursor
          Length = 1582

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 206 YLQKKFRHFCILTDNLSSDIELDIGFLSTNGVAVLSLNTFLTNKTGKYIKKTLPS 370
           ++ + FR     T   + DI+LD+  +   G  V +  T L+ +TG   + TLPS
Sbjct: 353 FIGRNFRSATESTAPAAGDIKLDV--IDPTGAPVATTTTRLSGETGADARFTLPS 405

>sp|Q00107|VG67_ICHV1 Hypothetical gene 67 protein
          Length = 1556

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 76   GDPVYFDRILHEIHT*RFLVLGGNPNRRRG 165
            G P+  DR+L++I   R L +G     RRG
Sbjct: 1445 GTPIVMDRVLYDISIDRILTVGERDGDRRG 1474

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,246,026
Number of Sequences: 369166
Number of extensions: 899218
Number of successful extensions: 2820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00947

  1. Dr_sW_023_P17
  2. Dr_sW_015_D10