Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_P17
(415 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6BSY1|MAD1_DEBHA Spindle assembly checkpoint component ... 32 0.39
sp|Q6BZE9|SNX4_DEBHA Sorting nexin-4 (Autophagy-related pro... 31 0.86
sp|P95949|HELX_SULSO Putative ATP-dependent helicase SSO0112 30 2.5
sp|Q6P5D4|CEP4_MOUSE Centrosomal protein 4 (Centrosomal pro... 29 3.3
sp|Q00107|VG67_ICHV1 Hypothetical gene 67 protein 28 5.6
sp|Q8XV02|YU30_RALSO Hypothetical UPF0192 protein RSc3030 p... 28 7.3
>sp|Q6BSY1|MAD1_DEBHA Spindle assembly checkpoint component MAD1 (Mitotic arrest
deficient protein 1)
Length = 669
Score = 32.3 bits (72), Expect = 0.39
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 98 EYSTKYTHEDSL---CLVEIQTGDEDITNQQDHVLNQQYYLQKKFRHFCILTDNLSSDIE 268
E +KY + + + +Q +DIT + D + + YL F+ FC + + SD+E
Sbjct: 84 ELQSKYDNSQQINGKTVESLQVQLKDITERYDELKEEHEYLNSDFKKFCRDNNQVKSDLE 143
Query: 269 LDI 277
I
Sbjct: 144 FHI 146
>sp|Q6BZE9|SNX4_DEBHA Sorting nexin-4 (Autophagy-related protein 24)
Length = 582
Score = 31.2 bits (69), Expect = 0.86
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 53 DTDVANLKEIQSILTEYSTKYTHEDSLCLVEIQTGDEDIT-----NQQDHVLNQ 199
D D L E ++I + TK +E + L+ +TGDE+I+ N+ DH++ +
Sbjct: 46 DNDTTKLNEPENIQEDDETKDDNEPTDSLILSKTGDENISNIESQNEGDHIVGE 99
>sp|P95949|HELX_SULSO Putative ATP-dependent helicase SSO0112
Length = 875
Score = 29.6 bits (65), Expect = 2.5
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +2
Query: 5 GSVHKHFCAQISENSPDTDVANLKEIQSILTEY--STKYTHEDSLCLVEIQTGDEDITNQ 178
G H IS+ A++ IL +Y + D+L L+EI +E I N
Sbjct: 599 GVTHNEIIESISKEYEIDKHASMSIYTYILEQYLFTNGKVPSDNLILIEIYDDEEGIRNY 658
Query: 179 QDHVLNQQYYLQKKFRHFC-ILTDNLSSDIELDIGFLSTNGVAV 307
H L + L R F ++++ L +D+ + + + NG A+
Sbjct: 659 IFHALYGRRALDALSRAFAYVVSEELDTDVRVSV---TDNGFAL 699
>sp|Q6P5D4|CEP4_MOUSE Centrosomal protein 4 (Centrosomal protein of 135 kDa) (Cep135
protein)
Length = 1140
Score = 29.3 bits (64), Expect = 3.3
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 17 KHFCAQISENSPDTDVANLKEIQSILTEYSTKYTHEDSLCLVEIQTGDEDITNQQDHVLN 196
K F + ++ + DT++ LKE ++ T + E S+ ++ D N + + N
Sbjct: 1043 KEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSN 1102
Query: 197 QQYYLQK---KFRHFCILTDNLSSDIE 268
++Y ++ + R + T LSS ++
Sbjct: 1103 EKYERERAIQEMRRLGLPTSPLSSTLK 1129
>sp|Q00107|VG67_ICHV1 Hypothetical gene 67 protein
Length = 1556
Score = 28.5 bits (62), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 76 GDPVYFDRVLHEIHT*RFLVLGGNPNRRRG 165
G P+ DRVL++I R L +G RRG
Sbjct: 1445 GTPIVMDRVLYDISIDRILTVGERDGDRRG 1474
>sp|Q8XV02|YU30_RALSO Hypothetical UPF0192 protein RSc3030 precursor
Length = 1582
Score = 28.1 bits (61), Expect = 7.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 206 YLQKKFRHFCILTDNLSSDIELDIGFLSTNGVAVLSLNTFLTNKTGKYIKKTLPS 370
++ + FR T + DI+LD+ + G V + T L+ +TG + TLPS
Sbjct: 353 FIGRNFRSATESTAPAAGDIKLDV--IDPTGAPVATTTTRLSGETGADARFTLPS 405
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,104,687
Number of Sequences: 369166
Number of extensions: 895074
Number of successful extensions: 2829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2828
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)