Planaria EST Database

DrC_00945

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00945
         (901 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35279|RAB6A_MOUSE  Ras-related protein Rab-6A (Rab-6)         315   1e-85
sp|P20340|RAB6A_HUMAN  Ras-related protein Rab-6A (Rab-6)         312   7e-85
sp|Q9NRW1|RAB6B_HUMAN  Ras-related protein Rab-6B >gi|471170...   308   2e-83
sp|Q22782|RAB6B_CAEEL  Ras-related protein Rab-6.2                305   1e-82
sp|P34213|RAB6A_CAEEL  Ras-related protein Rab-6.1                298   1e-80
sp|P17608|RYH1_SCHPO  GTP-binding protein ryh1                    285   1e-76
sp|Q9H0N0|RAB6C_HUMAN  Ras-related protein Rab-6C (Rab6-like...   280   5e-75
sp|Q99260|YPT6_YEAST  GTP-binding protein YPT6                    238   1e-62
sp|Q9WVB1|RAB6A_RAT  Ras-related protein Rab-6A (Rab-6)           196   1e-49
sp|P20339|RAB5A_HUMAN  Ras-related protein Rab-5A                 162   9e-40

>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6)
          Length = 208

 Score =  315 bits (807), Expect = 1e-85
 Identities = 160/209 (76%), Positives = 178/209 (85%), Gaps = 1/209 (0%)
 Frame = +2

Query: 29  MPGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDR 208
           M  G +F  PL+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDR
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60

Query: 209 TIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVI 388
           T+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTTKWIDDVRTERG+DVI
Sbjct: 61  TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120

Query: 389 IMLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKP 568
           IMLVGNKTDL DKR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLFRR+A  L   E  
Sbjct: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180

Query: 569 A-MPHEDLVEVRLKDHANEPANNSSNCWC 652
                ED+++++L+    +P  N   C C
Sbjct: 181 QDRSREDMIDIKLEKPQEQPV-NEGGCSC 208

>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6)
          Length = 208

 Score =  312 bits (800), Expect = 7e-85
 Identities = 159/209 (76%), Positives = 178/209 (85%), Gaps = 1/209 (0%)
 Frame = +2

Query: 29  MPGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDR 208
           M  G +F  PL+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDR
Sbjct: 1   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60

Query: 209 TIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVI 388
           T+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTTKWIDDVRTERG+DVI
Sbjct: 61  TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120

Query: 389 IMLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKP 568
           IMLVGNKTDL DKR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLFRR+A  L   E  
Sbjct: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180

Query: 569 A-MPHEDLVEVRLKDHANEPANNSSNCWC 652
                ED+++++L+    +P  +   C C
Sbjct: 181 QDRSREDMIDIKLEKPQEQPV-SEGGCSC 208

>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B
 sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B
          Length = 208

 Score =  308 bits (788), Expect = 2e-83
 Identities = 156/209 (74%), Positives = 177/209 (84%), Gaps = 1/209 (0%)
 Frame = +2

Query: 29  MPGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDR 208
           M  G +F  PL+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDR
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60

Query: 209 TIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVI 388
           T+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QT+KWIDDVRTERG+DVI
Sbjct: 61  TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI 120

Query: 389 IMLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREK- 565
           IMLVGNKTDL DKR+++ EEGE++A+ELSVMFIETSAK GYNVKQLFRR+A+ L   E  
Sbjct: 121 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV 180

Query: 566 PAMPHEDLVEVRLKDHANEPANNSSNCWC 652
                E +++++L D   EP  +   C C
Sbjct: 181 QEKSKEGMIDIKL-DKPQEPPASEGGCSC 208

>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2
          Length = 205

 Score =  305 bits (780), Expect = 1e-82
 Identities = 154/206 (74%), Positives = 178/206 (86%), Gaps = 2/206 (0%)
 Frame = +2

Query: 41  AEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTIRL 220
           ++F  PL+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 2   SDFGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 61

Query: 221 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVIIMLV 400
           QLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF+QT+KWIDDVRTERG+DVIIMLV
Sbjct: 62  QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLV 121

Query: 401 GNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATEL--LSREKPAM 574
           GNKTDL DKR+V+T+EGE+KA+EL+VMFIETSAKAGYNVKQLFRRIA  L  + ++ P  
Sbjct: 122 GNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIIKDDPVE 181

Query: 575 PHEDLVEVRLKDHANEPANNSSNCWC 652
           P   +    ++    +   +  +CWC
Sbjct: 182 PPNVVTMDPIRQ--RQIVTDEGSCWC 205

>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1
          Length = 205

 Score =  298 bits (763), Expect = 1e-80
 Identities = 151/177 (85%), Positives = 164/177 (92%), Gaps = 3/177 (1%)
 Frame = +2

Query: 59  LQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 238
           L+KFKLVFLGEQSVGKTS+ITRFMYDSFD+TYQATIGIDFLSKTMYLEDRTIRLQLWDTA
Sbjct: 9   LKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 68

Query: 239 GQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVIIMLVGNKTDL 418
           GQERFRSLIPSYIRDSSVAVVVYDITN NSF+QTTKW+DDVR ERG DVII+LVGNKTDL
Sbjct: 69  GQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDL 128

Query: 419 VDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATEL---LSREKPAMPH 580
            DKR+VSTE+GEKKAR+L+VMFIETSAKAGYNVKQLFR+IAT L   +  E P  P+
Sbjct: 129 ADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPN 185

>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1
          Length = 201

 Score =  285 bits (729), Expect = 1e-76
 Identities = 145/202 (71%), Positives = 167/202 (82%)
 Frame = +2

Query: 47  FSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTIRLQL 226
           +S  L+KFKLVFLGEQSVGKTSLITRFMYD FD+TYQATIGIDFLSKTMYLEDRT+RLQL
Sbjct: 5   YSFSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQL 64

Query: 227 WDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVIIMLVGN 406
           WDTAGQERFRSLIPSYIRDSSVA++VYDITN NSF  T KWI+DVR ERG DVII+LVGN
Sbjct: 65  WDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGN 124

Query: 407 KTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPAMPHED 586
           KTDL DKR+V+ EEGEKKA+EL +M +ETSAKAG+NVK LFR+IA  L     P M + +
Sbjct: 125 KTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQML-----PGMENVE 179

Query: 587 LVEVRLKDHANEPANNSSNCWC 652
               ++ D + +P  N S+C C
Sbjct: 180 TQSTQMIDVSIQPNENESSCNC 201

>sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C (Rab6-like protein WTH3)
          Length = 254

 Score =  280 bits (715), Expect = 5e-75
 Identities = 154/252 (61%), Positives = 181/252 (71%), Gaps = 4/252 (1%)
 Frame = +2

Query: 29  MPGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDR 208
           M  G +F  PL+KFKLVFLGEQSV KTSLITRF YDSFD+TYQA IGIDFLSKTMYLED 
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG 60

Query: 209 TIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVI 388
           TI L+LWDTAGQER RSLIP YIRDS+ AVVVYDITN NSF QTTKWIDDVRTERG+DVI
Sbjct: 61  TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120

Query: 389 IMLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKP 568
           I LVGN+TDL DKR+VS EEGE+KA+ L+V FIET AK GYNVKQLFRR+A  L   E  
Sbjct: 121 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST 180

Query: 569 A-MPHEDLVEVRLKDHANEPANNSSNCWC*NIEELLTI---LPFY*SNNNIDAGLTCFVT 736
                ED+ +++L +   E   +   C C +     T+    P+   + +++ GL  F +
Sbjct: 181 QDGSREDMSDIKL-EKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPS 239

Query: 737 FHLKCT*SILLV 772
               C  S+L V
Sbjct: 240 LITFCNSSLLPV 251

>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6
          Length = 215

 Score =  238 bits (608), Expect = 1e-62
 Identities = 120/166 (72%), Positives = 141/166 (84%), Gaps = 2/166 (1%)
 Frame = +2

Query: 59  LQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 238
           L K+K+VFLGEQ VGKTSLITRFMYD+FD  YQATIGIDFLSKTMYL+D+TIRLQLWDTA
Sbjct: 8   LTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTA 67

Query: 239 GQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTD-VIIMLVGNKTD 415
           GQERFRSLIPSYIRDS VA++VYDIT   SF    KWI+DV+ ERG + VI+ +VGNK+D
Sbjct: 68  GQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSD 127

Query: 416 LVDKRKVSTEEGEKKARELSV-MFIETSAKAGYNVKQLFRRIATEL 550
           L D+R++STEEGEKKA+ L   +F+ETS KAGYNVK LF++IA  L
Sbjct: 128 LSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSL 173

>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A (Rab-6)
          Length = 140

 Score =  196 bits (497), Expect = 1e-49
 Identities = 101/141 (71%), Positives = 115/141 (81%), Gaps = 1/141 (0%)
 Frame = +2

Query: 233 TAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVIIMLVGNKT 412
           TAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTTKWIDDVRTERG+DVIIMLVGNKT
Sbjct: 1   TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 60

Query: 413 DLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPA-MPHEDL 589
           DL DKR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLFRR+A  L   E       ED+
Sbjct: 61  DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 120

Query: 590 VEVRLKDHANEPANNSSNCWC 652
           ++++L+    +P  N   C C
Sbjct: 121 IDIKLEKPQEQPV-NEGGCSC 140

>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
          Length = 215

 Score =  162 bits (411), Expect = 9e-40
 Identities = 84/209 (40%), Positives = 127/209 (60%)
 Frame = +2

Query: 32  PGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRT 211
           P G      + +FKLV LGE +VGK+SL+ RF+   F    ++TIG  FL++T+ L+D T
Sbjct: 9   PNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT 68

Query: 212 IRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVII 391
           ++ ++WDTAGQER+ SL P Y R +  A+VVYDITN+ SF +   W+ +++ +   +++I
Sbjct: 69  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128

Query: 392 MLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPA 571
            L GNK DL +KR V  +E +  A + S++F+ETSAK   NV ++F  IA + L + +P 
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK-LPKNEPQ 187

Query: 572 MPHEDLVEVRLKDHANEPANNSSNCWC*N 658
            P  +    R  D   EP   + N  C N
Sbjct: 188 NPGANSARGRGVD-LTEPTQPTRNQCCSN 215

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,264,857
Number of Sequences: 369166
Number of extensions: 1801102
Number of successful extensions: 5624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5235
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00945

  1. Dr_sW_023_O07
  2. Dr_sW_005_P15