Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O07
(531 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6) 297 1e-80
sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6) 296 2e-80
sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 293 2e-79
sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B >gi|471170... 291 5e-79
sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 287 1e-77
sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 269 4e-72
sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C (Rab6-like... 266 2e-71
sp|Q99260|YPT6_YEAST GTP-binding protein YPT6 233 3e-61
sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A (Rab-6) 177 1e-44
sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A 155 4e-38
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6)
Length = 208
Score = 297 bits (760), Expect = 1e-80
Identities = 148/167 (88%), Positives = 158/167 (94%)
Frame = +2
Query: 29 MPGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDR 208
M G +F PL+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDR
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 209 TIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVI 388
T+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTTKWIDDVRTERG+DVI
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 389 IMLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
IMLVGNKTDL DKR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLF
Sbjct: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6)
Length = 208
Score = 296 bits (758), Expect = 2e-80
Identities = 148/167 (88%), Positives = 158/167 (94%)
Frame = +2
Query: 29 MPGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDR 208
M G +F PL+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDR
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 209 TIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVI 388
T+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTTKWIDDVRTERG+DVI
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 389 IMLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
IMLVGNKTDL DKR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLF
Sbjct: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2
Length = 205
Score = 293 bits (749), Expect = 2e-79
Identities = 144/163 (88%), Positives = 159/163 (97%)
Frame = +2
Query: 41 AEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTIRL 220
++F PL+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 2 SDFGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 61
Query: 221 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVIIMLV 400
QLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF+QT+KWIDDVRTERG+DVIIMLV
Sbjct: 62 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLV 121
Query: 401 GNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
GNKTDL DKR+V+T+EGE+KA+EL+VMFIETSAKAGYNVKQLF
Sbjct: 122 GNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF 164
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B
sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B
Length = 208
Score = 291 bits (746), Expect = 5e-79
Identities = 144/167 (86%), Positives = 157/167 (94%)
Frame = +2
Query: 29 MPGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDR 208
M G +F PL+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDR
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 209 TIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVI 388
T+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QT+KWIDDVRTERG+DVI
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI 120
Query: 389 IMLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
IMLVGNKTDL DKR+++ EEGE++A+ELSVMFIETSAK GYNVKQLF
Sbjct: 121 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 167
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1
Length = 205
Score = 287 bits (735), Expect = 1e-77
Identities = 143/157 (91%), Positives = 153/157 (97%)
Frame = +2
Query: 59 LQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 238
L+KFKLVFLGEQSVGKTS+ITRFMYDSFD+TYQATIGIDFLSKTMYLEDRTIRLQLWDTA
Sbjct: 9 LKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 68
Query: 239 GQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVIIMLVGNKTDL 418
GQERFRSLIPSYIRDSSVAVVVYDITN NSF+QTTKW+DDVR ERG DVII+LVGNKTDL
Sbjct: 69 GQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDL 128
Query: 419 VDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
DKR+VSTE+GEKKAR+L+VMFIETSAKAGYNVKQLF
Sbjct: 129 ADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLF 165
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1
Length = 201
Score = 269 bits (687), Expect = 4e-72
Identities = 133/161 (82%), Positives = 147/161 (91%)
Frame = +2
Query: 47 FSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTIRLQL 226
+S L+KFKLVFLGEQSVGKTSLITRFMYD FD+TYQATIGIDFLSKTMYLEDRT+RLQL
Sbjct: 5 YSFSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQL 64
Query: 227 WDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVIIMLVGN 406
WDTAGQERFRSLIPSYIRDSSVA++VYDITN NSF T KWI+DVR ERG DVII+LVGN
Sbjct: 65 WDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGN 124
Query: 407 KTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
KTDL DKR+V+ EEGEKKA+EL +M +ETSAKAG+NVK LF
Sbjct: 125 KTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLF 165
>sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C (Rab6-like protein WTH3)
Length = 254
Score = 266 bits (680), Expect = 2e-71
Identities = 134/167 (80%), Positives = 145/167 (86%)
Frame = +2
Query: 29 MPGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDR 208
M G +F PL+KFKLVFLGEQSV KTSLITRF YDSFD+TYQA IGIDFLSKTMYLED
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG 60
Query: 209 TIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVI 388
TI L+LWDTAGQER RSLIP YIRDS+ AVVVYDITN NSF QTTKWIDDVRTERG+DVI
Sbjct: 61 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 389 IMLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
I LVGN+TDL DKR+VS EEGE+KA+ L+V FIET AK GYNVKQLF
Sbjct: 121 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLF 167
>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6
Length = 215
Score = 233 bits (593), Expect = 3e-61
Identities = 117/159 (73%), Positives = 136/159 (85%), Gaps = 2/159 (1%)
Frame = +2
Query: 59 LQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 238
L K+K+VFLGEQ VGKTSLITRFMYD+FD YQATIGIDFLSKTMYL+D+TIRLQLWDTA
Sbjct: 8 LTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTA 67
Query: 239 GQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTD-VIIMLVGNKTD 415
GQERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG + VI+ +VGNK+D
Sbjct: 68 GQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSD 127
Query: 416 LVDKRKVSTEEGEKKARELSV-MFIETSAKAGYNVKQLF 529
L D+R++STEEGEKKA+ L +F+ETS KAGYNVK LF
Sbjct: 128 LSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALF 166
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A (Rab-6)
Length = 140
Score = 177 bits (450), Expect = 1e-44
Identities = 89/99 (89%), Positives = 95/99 (95%)
Frame = +2
Query: 233 TAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVIIMLVGNKT 412
TAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTTKWIDDVRTERG+DVIIMLVGNKT
Sbjct: 1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 60
Query: 413 DLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
DL DKR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLF
Sbjct: 61 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 99
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
Length = 215
Score = 155 bits (393), Expect = 4e-38
Identities = 72/166 (43%), Positives = 110/166 (66%)
Frame = +2
Query: 32 PGGAEFSAPLQKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRT 211
P G + +FKLV LGE +VGK+SL+ RF+ F ++TIG FL++T+ L+D T
Sbjct: 9 PNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT 68
Query: 212 IRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNDNSFNQTTKWIDDVRTERGTDVII 391
++ ++WDTAGQER+ SL P Y R + A+VVYDITN+ SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 392 MLVGNKTDLVDKRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLF 529
L GNK DL +KR V +E + A + S++F+ETSAK NV ++F
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,068,979
Number of Sequences: 369166
Number of extensions: 1059866
Number of successful extensions: 4004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3650
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)