Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_P15
(658 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6) 186 4e-47
sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A (Rab-6) 186 4e-47
sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6) 184 1e-46
sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 179 4e-45
sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B >gi|471170... 179 6e-45
sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 179 7e-45
sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 167 3e-41
sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C (Rab6-like... 164 1e-40
sp|Q99260|YPT6_YEAST GTP-binding protein YPT6 130 3e-30
sp|P31582|RHA1_ARATH Ras-related protein RHA1 102 9e-22
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6)
Length = 208
Score = 186 bits (473), Expect = 4e-47
Identities = 96/137 (70%), Positives = 111/137 (81%), Gaps = 1/137 (0%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ERFRSLIPSYIRDS+VAVVVYDITN NSF +TTKWIDDVRTERG+DVIIMLVGNKTDL D
Sbjct: 73 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPA-MPHEDLVEVR 358
KR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLFRR+A L E ED+++++
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 192
Query: 359 LKDHANEPANNSSNCWC 409
L+ +P N C C
Sbjct: 193 LEKPQEQPV-NEGGCSC 208
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A (Rab-6)
Length = 140
Score = 186 bits (473), Expect = 4e-47
Identities = 96/137 (70%), Positives = 111/137 (81%), Gaps = 1/137 (0%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ERFRSLIPSYIRDS+VAVVVYDITN NSF +TTKWIDDVRTERG+DVIIMLVGNKTDL D
Sbjct: 5 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 64
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPA-MPHEDLVEVR 358
KR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLFRR+A L E ED+++++
Sbjct: 65 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 124
Query: 359 LKDHANEPANNSSNCWC 409
L+ +P N C C
Sbjct: 125 LEKPQEQPV-NEGGCSC 140
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6)
Length = 208
Score = 184 bits (468), Expect = 1e-46
Identities = 95/137 (69%), Positives = 111/137 (81%), Gaps = 1/137 (0%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ERFRSLIPSYIRDS+VAVVVYDITN NSF +TTKWIDDVRTERG+DVIIMLVGNKTDL D
Sbjct: 73 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPA-MPHEDLVEVR 358
KR+VS EEGE+KA+EL+VMFIETSAKAGYNVKQLFRR+A L E ED+++++
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 192
Query: 359 LKDHANEPANNSSNCWC 409
L+ +P + C C
Sbjct: 193 LEKPQEQPV-SEGGCSC 208
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2
Length = 205
Score = 179 bits (455), Expect = 4e-45
Identities = 92/138 (66%), Positives = 112/138 (81%), Gaps = 2/138 (1%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ERFRSLIPSYIRDS+VAVVVYDITN NSF++T+KWIDDVRTERG+DVIIMLVGNKTDL D
Sbjct: 70 ERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 129
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATEL--LSREKPAMPHEDLVEV 355
KR+V+T+EGE+KA+EL+VMFIETSAKAGYNVKQLFRRIA L + ++ P P +
Sbjct: 130 KRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIIKDDPVEPPNVVTMD 189
Query: 356 RLKDHANEPANNSSNCWC 409
++ + + +CWC
Sbjct: 190 PIRQ--RQIVTDEGSCWC 205
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B
sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B
Length = 208
Score = 179 bits (454), Expect = 6e-45
Identities = 92/137 (67%), Positives = 110/137 (80%), Gaps = 1/137 (0%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ERFRSLIPSYIRDS+VAVVVYDITN NSF +T+KWIDDVRTERG+DVIIMLVGNKTDL D
Sbjct: 73 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREK-PAMPHEDLVEVR 358
KR+++ EEGE++A+ELSVMFIETSAK GYNVKQLFRR+A+ L E E +++++
Sbjct: 133 KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIK 192
Query: 359 LKDHANEPANNSSNCWC 409
L D EP + C C
Sbjct: 193 L-DKPQEPPASEGGCSC 208
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1
Length = 205
Score = 179 bits (453), Expect = 7e-45
Identities = 91/115 (79%), Positives = 102/115 (88%), Gaps = 3/115 (2%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ERFRSLIPSYIRDSSVAVVVYDITN NSF++TTKW+DDVR ERG DVII+LVGNKTDL D
Sbjct: 71 ERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLAD 130
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATEL---LSREKPAMPH 337
KR+VSTE+GEKKAR+L+VMFIETSAKAGYNVKQLFR+IAT L + E P P+
Sbjct: 131 KRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPN 185
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1
Length = 201
Score = 167 bits (422), Expect = 3e-41
Identities = 86/136 (63%), Positives = 104/136 (76%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ERFRSLIPSYIRDSSVA++VYDITN NSF T KWI+DVR ERG DVII+LVGNKTDL D
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLAD 130
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPAMPHEDLVEVRL 361
KR+V+ EEGEKKA+EL +M +ETSAKAG+NVK LFR+IA L P M + + ++
Sbjct: 131 KRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQML-----PGMENVETQSTQM 185
Query: 362 KDHANEPANNSSNCWC 409
D + +P N S+C C
Sbjct: 186 IDVSIQPNENESSCNC 201
>sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C (Rab6-like protein WTH3)
Length = 254
Score = 164 bits (416), Expect = 1e-40
Identities = 95/180 (52%), Positives = 119/180 (66%), Gaps = 4/180 (2%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ER RSLIP YIRDS+ AVVVYDITN NSF +TTKWIDDVRTERG+DVII LVGN+TDL D
Sbjct: 73 ERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLAD 132
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPA-MPHEDLVEVR 358
KR+VS EEGE+KA+ L+V FIET AK GYNVKQLFRR+A L E ED+ +++
Sbjct: 133 KRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMESTQDGSREDMSDIK 192
Query: 359 LKDHANEPANNSSNCWC*NIEELLTI---LPFY*SNNNIDAGLTCFVTFHLKCT*SILLV 529
L + E + C C + T+ P+ + +++ GL F + C S+L V
Sbjct: 193 L-EKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSLITFCNSSLLPV 251
>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6
Length = 215
Score = 130 bits (327), Expect = 3e-30
Identities = 67/104 (64%), Positives = 83/104 (79%), Gaps = 2/104 (1%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTD-VIIMLVGNKTDLV 178
ERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG + VI+ +VGNK+DL
Sbjct: 70 ERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSDLS 129
Query: 179 DKRKVSTEEGEKKARELSV-MFIETSAKAGYNVKQLFRRIATEL 307
D+R++STEEGEKKA+ L +F+ETS KAGYNVK LF++IA L
Sbjct: 130 DERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSL 173
>sp|P31582|RHA1_ARATH Ras-related protein RHA1
Length = 200
Score = 102 bits (254), Expect = 9e-22
Identities = 51/109 (46%), Positives = 73/109 (66%)
Frame = +2
Query: 2 ERFRSLIPSYIRDSSVAVVVYDITNDNSFNRTTKWIDDVRTERGTDVIIMLVGNKTDLVD 181
ER+ SL P Y R ++ A++V+DITN SF R KW+ +++ + ++++ L GNK DL+D
Sbjct: 70 ERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129
Query: 182 KRKVSTEEGEKKARELSVMFIETSAKAGYNVKQLFRRIATELLSREKPA 328
RKVS EE E A+E S+ F+ETSAK NVK +F IA + L R +PA
Sbjct: 130 ARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIA-KRLPRVQPA 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,801,394
Number of Sequences: 369166
Number of extensions: 1164315
Number of successful extensions: 3490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)