Planaria EST Database

DrC_00941

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00941
         (845 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03369|RU1C_XENLA  U1 small nuclear ribonucleoprotein C (...    87   4e-17
sp|P09234|RU1C_HUMAN  U1 small nuclear ribonucleoprotein C (...    87   4e-17
sp|Q62241|RU1C_MOUSE  U1 small nuclear ribonucleoprotein C (...    87   4e-17
sp|Q05900|RU1C_YEAST  U1 small nuclear ribonucleoprotein C h...    37   0.053
sp|P0A1W2|LEP_SALTY  Signal peptidase I (SPase I) (Leader pe...    31   4.9  
sp|Q7YJY0|RPOC2_CALFE  DNA-directed RNA polymerase beta'' ch...    31   4.9  
sp|P00803|LEP_ECOLI  Signal peptidase I (SPase I) (Leader pe...    31   4.9  
sp|Q19552|SRA29_CAEEL  Serpentine receptor class alpha-29 (P...    30   6.4  

>sp|Q03369|RU1C_XENLA U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C
           protein) (U1-C)
          Length = 159

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 34/52 (65%), Positives = 45/52 (86%)
 Frame = +3

Query: 12  DYCDTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQKLVDQTSLALR 167
           DYCDT+LTHDSPSVRKTHC GR H++NV+ YYQ+W+E+Q Q L+D+T+ A +
Sbjct: 7   DYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQ 58

>sp|P09234|RU1C_HUMAN U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C
           protein) (U1-C)
          Length = 159

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 34/52 (65%), Positives = 45/52 (86%)
 Frame = +3

Query: 12  DYCDTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQKLVDQTSLALR 167
           DYCDT+LTHDSPSVRKTHC GR H++NV+ YYQ+W+E+Q Q L+D+T+ A +
Sbjct: 7   DYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQ 58

>sp|Q62241|RU1C_MOUSE U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C
           protein) (U1-C)
          Length = 159

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 34/52 (65%), Positives = 45/52 (86%)
 Frame = +3

Query: 12  DYCDTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQKLVDQTSLALR 167
           DYCDT+LTHDSPSVRKTHC GR H++NV+ YYQ+W+E+Q Q L+D+T+ A +
Sbjct: 7   DYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQ 58

>sp|Q05900|RU1C_YEAST U1 small nuclear ribonucleoprotein C homolog (U1 snRNP protein C)
           (U1-C)
          Length = 231

 Score = 37.4 bits (85), Expect = 0.053
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 12  DYCDTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQK 137
           +YC ++LTHD+ SVRK+H  G+ H      YY+      + K
Sbjct: 7   EYCHSYLTHDTLSVRKSHLVGKNHLRITADYYRNKARDIINK 48

>sp|P0A1W2|LEP_SALTY Signal peptidase I (SPase I) (Leader peptidase I)
 sp|P0A1W3|LEP_SALTI Signal peptidase I (SPase I) (Leader peptidase I)
          Length = 324

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 569 IKE*IYQRGRISTTWIKRNDNSKLKMIEKPKLDYL 465
           IK+ IYQ+  I T   KR D    K  E PKLDY+
Sbjct: 111 IKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYI 145

>sp|Q7YJY0|RPOC2_CALFE DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
            polymerase beta'' subunit) (RNA polymerase beta''
            subunit)
          Length = 1377

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 786  KLMQFKNCYYLI*HNEILNLRYLSL 712
            K+  F + YYLI HN+IL  +YLSL
Sbjct: 987  KIANFDSSYYLITHNQILLNKYLSL 1011

>sp|P00803|LEP_ECOLI Signal peptidase I (SPase I) (Leader peptidase I)
          Length = 324

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 569 IKE*IYQRGRISTTWIKRNDNSKLKMIEKPKLDYL 465
           IK+ IYQ+  I T   KR D    K  E PKLDY+
Sbjct: 111 IKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYI 145

>sp|Q19552|SRA29_CAEEL Serpentine receptor class alpha-29 (Protein sra-29)
          Length = 348

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 372 SSFINSAYSRTVSSCLESSFTCNATVFFSIQQI----VQFRFFNHFQFTIVVSFYPCCRY 539
           S F++  +S    S   S  T    VF  +Q I    +QF  F+   +T   S+ P C Y
Sbjct: 123 SLFLDRLFSLNPRSFYNSHQTLGFIVFLILQIICPIAIQFWTFHDSDYT---SYVPMCNY 179

Query: 540 PPA 548
           PPA
Sbjct: 180 PPA 182

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,752,773
Number of Sequences: 369166
Number of extensions: 1782772
Number of successful extensions: 4527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4525
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00941

  1. Dr_sW_023_N13
  2. Dr_sW_009_D02