Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_D02
(658 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P0A1W2|LEP_SALTY Signal peptidase I (SPase I) (Leader pe... 31 3.2
sp|Q7YJY0|RPOC2_CALFE DNA-directed RNA polymerase beta'' ch... 31 3.2
sp|P00803|LEP_ECOLI Signal peptidase I (SPase I) (Leader pe... 31 3.2
sp|Q19552|SRA29_CAEEL Serpentine receptor class alpha-29 (P... 30 4.2
>sp|P0A1W2|LEP_SALTY Signal peptidase I (SPase I) (Leader peptidase I)
sp|P0A1W3|LEP_SALTI Signal peptidase I (SPase I) (Leader peptidase I)
Length = 324
Score = 30.8 bits (68), Expect = 3.2
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -1
Query: 382 IKE*IYQRGRISTTWIKRNDNSKLKMIEKPKLDYL 278
IK+ IYQ+ I T KR D K E PKLDY+
Sbjct: 111 IKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYI 145
>sp|Q7YJY0|RPOC2_CALFE DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1377
Score = 30.8 bits (68), Expect = 3.2
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 599 KLMQFKNCYYLI*HNEILNLRYLSL 525
K+ F + YYLI HN+IL +YLSL
Sbjct: 987 KIANFDSSYYLITHNQILLNKYLSL 1011
>sp|P00803|LEP_ECOLI Signal peptidase I (SPase I) (Leader peptidase I)
Length = 324
Score = 30.8 bits (68), Expect = 3.2
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -1
Query: 382 IKE*IYQRGRISTTWIKRNDNSKLKMIEKPKLDYL 278
IK+ IYQ+ I T KR D K E PKLDY+
Sbjct: 111 IKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYI 145
>sp|Q19552|SRA29_CAEEL Serpentine receptor class alpha-29 (Protein sra-29)
Length = 348
Score = 30.4 bits (67), Expect = 4.2
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +2
Query: 185 SSFINSAYSRTVSSCLESSFTCNATVFFSIQQI----VQFRFFNHFQFTIVVSFYPCCRY 352
S F++ +S S S T VF +Q I +QF F+ +T S+ P C Y
Sbjct: 123 SLFLDRLFSLNPRSFYNSHQTLGFIVFLILQIICPIAIQFWTFHDSDYT---SYVPMCNY 179
Query: 353 PPA 361
PPA
Sbjct: 180 PPA 182
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,299,365
Number of Sequences: 369166
Number of extensions: 1266157
Number of successful extensions: 3312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3310
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)