Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_N13
(609 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03369|RU1C_XENLA U1 small nuclear ribonucleoprotein C (... 87 3e-17
sp|P09234|RU1C_HUMAN U1 small nuclear ribonucleoprotein C (... 87 3e-17
sp|Q62241|RU1C_MOUSE U1 small nuclear ribonucleoprotein C (... 87 3e-17
sp|Q05900|RU1C_YEAST U1 small nuclear ribonucleoprotein C h... 37 0.030
sp|P0A1W2|LEP_SALTY Signal peptidase I (SPase I) (Leader pe... 31 2.8
sp|P00803|LEP_ECOLI Signal peptidase I (SPase I) (Leader pe... 31 2.8
sp|Q19552|SRA29_CAEEL Serpentine receptor class alpha-29 (P... 30 3.7
sp|Q8NEZ4|MLL3_HUMAN Myeloid/lymphoid or mixed-lineage leuk... 29 8.2
sp|Q8BRH4|MLL3_MOUSE Myeloid/lymphoid or mixed-lineage leuk... 29 8.2
>sp|Q03369|RU1C_XENLA U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C
protein) (U1-C)
Length = 159
Score = 87.4 bits (215), Expect = 3e-17
Identities = 34/52 (65%), Positives = 45/52 (86%)
Frame = +3
Query: 12 DYCDTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQKLVDQTSLALR 167
DYCDT+LTHDSPSVRKTHC GR H++NV+ YYQ+W+E+Q Q L+D+T+ A +
Sbjct: 7 DYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQ 58
>sp|P09234|RU1C_HUMAN U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C
protein) (U1-C)
Length = 159
Score = 87.4 bits (215), Expect = 3e-17
Identities = 34/52 (65%), Positives = 45/52 (86%)
Frame = +3
Query: 12 DYCDTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQKLVDQTSLALR 167
DYCDT+LTHDSPSVRKTHC GR H++NV+ YYQ+W+E+Q Q L+D+T+ A +
Sbjct: 7 DYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQ 58
>sp|Q62241|RU1C_MOUSE U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C
protein) (U1-C)
Length = 159
Score = 87.4 bits (215), Expect = 3e-17
Identities = 34/52 (65%), Positives = 45/52 (86%)
Frame = +3
Query: 12 DYCDTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQKLVDQTSLALR 167
DYCDT+LTHDSPSVRKTHC GR H++NV+ YYQ+W+E+Q Q L+D+T+ A +
Sbjct: 7 DYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQ 58
>sp|Q05900|RU1C_YEAST U1 small nuclear ribonucleoprotein C homolog (U1 snRNP protein C)
(U1-C)
Length = 231
Score = 37.4 bits (85), Expect = 0.030
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 12 DYCDTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQK 137
+YC ++LTHD+ SVRK+H G+ H YY+ + K
Sbjct: 7 EYCHSYLTHDTLSVRKSHLVGKNHLRITADYYRNKARDIINK 48
>sp|P0A1W2|LEP_SALTY Signal peptidase I (SPase I) (Leader peptidase I)
sp|P0A1W3|LEP_SALTI Signal peptidase I (SPase I) (Leader peptidase I)
Length = 324
Score = 30.8 bits (68), Expect = 2.8
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2
Query: 569 IKE*IYQRGRISTTWIKRNDNSKLKMIEKPKLDYL 465
IK+ IYQ+ I T KR D K E PKLDY+
Sbjct: 111 IKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYI 145
>sp|P00803|LEP_ECOLI Signal peptidase I (SPase I) (Leader peptidase I)
Length = 324
Score = 30.8 bits (68), Expect = 2.8
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2
Query: 569 IKE*IYQRGRISTTWIKRNDNSKLKMIEKPKLDYL 465
IK+ IYQ+ I T KR D K E PKLDY+
Sbjct: 111 IKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYI 145
>sp|Q19552|SRA29_CAEEL Serpentine receptor class alpha-29 (Protein sra-29)
Length = 348
Score = 30.4 bits (67), Expect = 3.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 372 SSFINSAYSRTVSSCLESSFTCNATVFFSIQQI----VQFRFFNHFQFTIVVSFYPCCRY 539
S F++ +S S S T VF +Q I +QF F+ +T S+ P C Y
Sbjct: 123 SLFLDRLFSLNPRSFYNSHQTLGFIVFLILQIICPIAIQFWTFHDSDYT---SYVPMCNY 179
Query: 540 PPA 548
PPA
Sbjct: 180 PPA 182
>sp|Q8NEZ4|MLL3_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
(Histone-lysine N-methyltransferase, H3 lysine-4 specific
MLL3) (Homologous to ALR protein)
Length = 4911
Score = 29.3 bits (64), Expect = 8.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 21 DTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQKL 140
D +TH + G F D+ RK Y+EWL++ Q L
Sbjct: 3152 DGSITHQISRPNPPNFGPGFVNDSQRKQYEEWLQETQQLL 3191
>sp|Q8BRH4|MLL3_MOUSE Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
(Histone-lysine N-methyltransferase, H3 lysine-4 specific
MLL3)
Length = 4903
Score = 29.3 bits (64), Expect = 8.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 21 DTFLTHDSPSVRKTHCGGRFHRDNVRKYYQEWLEQQVQKL 140
D +TH + G F D+ RK Y+EWL++ Q L
Sbjct: 3145 DGSITHQISRPNPPNFGPGFVNDSQRKQYEEWLQETQQLL 3184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,997,081
Number of Sequences: 369166
Number of extensions: 1397861
Number of successful extensions: 3857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3855
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)