Planaria EST Database

DrC_00940

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00940
         (471 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6VZQ4|V27K_CNPV  27 kDa virion core protein                    32   0.95 
sp|Q8TRL2|MRE11_METAC  DNA double-strand break repair protei...    30   2.1  
sp|Q8PUY5|MRE11_METMA  DNA double-strand break repair protei...    30   2.8  
sp|Q59185|LON1_BORBU  ATP-dependent protease La                    28   8.1  

>sp|Q6VZQ4|V27K_CNPV 27 kDa virion core protein
          Length = 267

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 24  LIQTLKKILKVFSMK*IIVHVQNRMPKSREEVQMPNLVVDREDYLKGVQ 170
           LI+TLK+I+ + S     V V N +  SR+ +++ N   DRED+L  V+
Sbjct: 191 LIETLKEIVTINSEDIWKVIVSNDIFDSRDVIKLINFDYDREDFLSFVR 239

>sp|Q8TRL2|MRE11_METAC DNA double-strand break repair protein mre11
          Length = 614

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 138 VDREDYLKGVQLIVNVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRALSARSIISRL 308
           V R+D+ K  + ++    V++QV A+V A    GDL D     L+  L   +I+SRL
Sbjct: 24  VRRQDFFKAFETVIQ-DAVDMQVDAVVHA----GDLFDSRNPTLEDLLETMNILSRL 75

>sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protein mre11
          Length = 617

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 138 VDREDYLKGVQLIVNVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRALSARSIISRL 308
           V R+D+ K  + ++    V++QV A+V A    GDL D     L+  L   +++SRL
Sbjct: 24  VRRQDFFKAFETVIK-DAVDMQVDAVVHA----GDLFDSRNPTLEDLLETMNVLSRL 75

>sp|Q59185|LON1_BORBU ATP-dependent protease La
          Length = 806

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/102 (19%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
 Frame = +3

Query: 15  HQFLIQTL------KKILKVFSMK*IIVHVQNRMPKS-REEVQMPNLVVDREDYLKGVQL 173
           HQ +++TL      KK+L++   +  ++ +QN++ K  +E ++        ++ LK ++ 
Sbjct: 211 HQIVLETLNVKDRLKKVLELIYEELNLIEIQNKIAKGIQERLEKQQKEFFLKEQLKAIKA 270

Query: 174 IVNVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRALSARSII 299
            + +G  +      +  +L   +LK    +V+++ L   S++
Sbjct: 271 ELGIGDKKSSDLEKLKTKLKALELKGEPLEVVEKELEKFSLL 312

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,712,498
Number of Sequences: 369166
Number of extensions: 552847
Number of successful extensions: 1593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00940

  1. Dr_sW_023_N09
  2. Dr_sW_016_N21