Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_N09
(471 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6VZQ4|V27K_CNPV 27 kDa virion core protein 32 0.95
sp|Q8TRL2|MRE11_METAC DNA double-strand break repair protei... 30 2.1
sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protei... 30 2.8
sp|Q59185|LON1_BORBU ATP-dependent protease La 28 8.1
>sp|Q6VZQ4|V27K_CNPV 27 kDa virion core protein
Length = 267
Score = 31.6 bits (70), Expect = 0.95
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +3
Query: 24 LIQTLKKILKVFSMK*IIVHVQNRMPKSREEVQMPNLVVDREDYLKGVQ 170
LI+TLK+I+ + S V V N + SR+ +++ N DRED+L V+
Sbjct: 191 LIETLKEIVTINSEDIWKVIVSNDIFDSRDVIKLINFDYDREDFLSFVR 239
>sp|Q8TRL2|MRE11_METAC DNA double-strand break repair protein mre11
Length = 614
Score = 30.4 bits (67), Expect = 2.1
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 138 VDREDYLKGVQLIVNVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRALSARSIISRL 308
V R+D+ K + ++ V++QV A+V A GDL D L+ L +I+SRL
Sbjct: 24 VRRQDFFKAFETVIQ-DAVDMQVDAVVHA----GDLFDSRNPTLEDLLETMNILSRL 75
>sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protein mre11
Length = 617
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 138 VDREDYLKGVQLIVNVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRALSARSIISRL 308
V R+D+ K + ++ V++QV A+V A GDL D L+ L +++SRL
Sbjct: 24 VRRQDFFKAFETVIK-DAVDMQVDAVVHA----GDLFDSRNPTLEDLLETMNVLSRL 75
>sp|Q59185|LON1_BORBU ATP-dependent protease La
Length = 806
Score = 28.5 bits (62), Expect = 8.1
Identities = 20/102 (19%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Frame = +3
Query: 15 HQFLIQTL------KKILKVFSMK*IIVHVQNRMPKS-REEVQMPNLVVDREDYLKGVQL 173
HQ +++TL KK+L++ + ++ +QN++ K +E ++ ++ LK ++
Sbjct: 211 HQIVLETLNVKDRLKKVLELIYEELNLIEIQNKIAKGIQERLEKQQKEFFLKEQLKAIKA 270
Query: 174 IVNVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRALSARSII 299
+ +G + + +L +LK +V+++ L S++
Sbjct: 271 ELGIGDKKSSDLEKLKTKLKALELKGEPLEVVEKELEKFSLL 312
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,712,498
Number of Sequences: 369166
Number of extensions: 552847
Number of successful extensions: 1593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)