Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_N21
(344 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TRL2|MRE11_METAC DNA double-strand break repair protei... 30 1.3
sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protei... 30 1.7
sp|Q7TV16|ILVD_PROMM Dihydroxy-acid dehydratase (DAD) 28 8.6
>sp|Q8TRL2|MRE11_METAC DNA double-strand break repair protein mre11
Length = 614
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 11 VDREDYLKGVQLIVNVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRALSARSIISRL 181
V R+D+ K + ++ V++QV A+V A GDL D L+ L +I+SRL
Sbjct: 24 VRRQDFFKAFETVIQ-DAVDMQVDAVVHA----GDLFDSRNPTLEDLLETMNILSRL 75
>sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protein mre11
Length = 617
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 11 VDREDYLKGVQLIVNVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRALSARSIISRL 181
V R+D+ K + ++ V++QV A+V A GDL D L+ L +++SRL
Sbjct: 24 VRRQDFFKAFETVIK-DAVDMQVDAVVHA----GDLFDSRNPTLEDLLETMNVLSRL 75
>sp|Q7TV16|ILVD_PROMM Dihydroxy-acid dehydratase (DAD)
Length = 556
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 53 NVGRVEVQVKALVDAQLSEGDLKDVEAQVLQRAL 154
N G + +K L+DA L GD ++VE + L+ L
Sbjct: 317 NAGGIPQVMKQLLDAGLLHGDCRNVEGKTLRELL 350
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,230,230
Number of Sequences: 369166
Number of extensions: 358321
Number of successful extensions: 846
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)