Planarian EST Database

DrC_00926

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00926 GTTAAAAATATCCAGATCCTTTTATTTTTCAATTTATACGCAGGATATTTTTAAAAAAAG TATTGATCAACTTCATTTGCGAGTATGAATACTTTCCGATGTCAGTCTATTATAGTAATT AAAAGGTCATCCATGATGGTGTCTTGAAATCTGAATTGAACACTTTTTTCAAAAACGAAC TCTCAGAATGTGGATATGCCGGCATTGATTTGAGATGTGCACCAAATCGATATGAAGTAA TTTTGAAAGTTACCAAAACTCAAGAAGCTTTGGGAACTAAAGGTCAGAGAGTAAGAGAAA TGTCTACAATTCTCTGCAAACGATTCAACTGGGAGCCAAAAAATCTCGATATTTACATTG AGAAAATCACTAACCGTGGATTATCCGCTTCTGCTCAAGCTGAATCAATCAAGTTCAAAT TGCTTGCTGGTGTTGCAGTTAGAAAAGCTGCTGCATCTGTTCTCAGTTTCGCCATGCAAA GTGGAGCCCAAGGTGCTGAAGTCGTCATTTCTGGTAAAATTAGAGGTCAAAGAGCAAAGG CCATGAAATTCCCAGTTGGTTTGATGATCCACTCCGGTCAACCATCAAAGGAATTCGTCG AACGAGCTGTTAGATCTGTTGAATTGAGACAAGGTGTCCTTGGTATCAAGGTTAGCATCA TGAAGGCTCAAGATCCAACTGGAAAGGAAGGACCAAGCAGACCAATTCCAGACCAAATTG TCATTAATCAACCAAAAGAAGACAAGACCATTGATGCTCCTTACAGTGATAACAAAGTCG TTGCAGTTGCACCAGTTGCAGAGGAATAATTTTCTTTAATAAATATTGGGATTTTATTTG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00926
         (840 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06559|RS3_DROME  40S ribosomal protein S3                     242   1e-63
sp|P23396|RS3_HUMAN  40S ribosomal protein S3                     238   1e-62
sp|Q90YS2|RS3_ICTPU  40S ribosomal protein S3                     238   2e-62
sp|P79891|RS3_AMBME  40S ribosomal protein S3                     238   2e-62
sp|P02350|RS3A_XENLA  40S ribosomal protein S3-A (S1A)            237   3e-62
sp|P62909|RS3_RAT  40S ribosomal protein S3 >gi|51703309|sp|...   237   3e-62
sp|P47835|RS3B_XENLA  40S ribosomal protein S3B (S1B)             236   8e-62
sp|P48152|RS3_CAEEL  40S ribosomal protein S3                     236   8e-62
sp|P48153|RS3_MANSE  40S ribosomal protein S3                     235   1e-61
sp|O60128|RS3_SCHPO  40S ribosomal protein S3                     222   1e-57

>sp|Q06559|RS3_DROME 40S ribosomal protein S3
          Length = 246

 Score =  242 bits (617), Expect = 1e-63
 Identities = 114/218 (52%), Positives = 160/218 (73%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DG+ K+ELN F   EL+E GY+G+++R  P+R E+I+  TKTQ+ LG KG+R+RE+
Sbjct: 12  KFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIREL 71

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           + ++ KRFN+E   +++Y EK+  RGL A AQAES+++KL  G+AVR+A   VL + M+S
Sbjct: 72  TAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMES 131

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GA+G EVV+SGK+RGQRAK+MKF  GLMIHSG P  ++VE A R V LRQGVLGIKV +M
Sbjct: 132 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVM 191

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
              DP  K GP +P+PD + + +PKE+K  + P ++ K
Sbjct: 192 LPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229

>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
          Length = 243

 Score =  238 bits (608), Expect = 1e-62
 Identities = 116/218 (53%), Positives = 158/218 (72%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DG+ K+ELN F   EL+E GY+G+++R  P R E+I+  T+TQ  LG KG+R+RE+
Sbjct: 10  KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           + ++ KRF +   ++++Y EK+  RGL A AQAES+++KLL G+AVR+A   VL F M+S
Sbjct: 70  TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GA+G EVV+SGK+RGQRAK+MKF  GLMIHSG P   +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
              DPTGK GP +P+PD + I +PK++     P S+ K
Sbjct: 190 LPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227

>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
          Length = 245

 Score =  238 bits (607), Expect = 2e-62
 Identities = 116/218 (53%), Positives = 158/218 (72%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DG+ K+ELN F   EL+E GY+G+++R  P R E+I+  T+TQ  LG KG+R+RE+
Sbjct: 10  KFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           + ++ KRF +   ++++Y EK+  RGL A AQAES+++KLL G+AVR+A   VL F M+S
Sbjct: 70  TAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GA+G EVV+SGK+RGQRAK+MKF  GLMIHSG P   +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
              DP+GK GP +P+PD + I +PKE+     P S+ K
Sbjct: 190 LPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSEQK 227

>sp|P79891|RS3_AMBME 40S ribosomal protein S3
          Length = 253

 Score =  238 bits (606), Expect = 2e-62
 Identities = 115/218 (52%), Positives = 159/218 (72%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DG+ K+ELN F   EL+E GY+G+++R  P R E+I+  T+TQ  LG KG+R+RE+
Sbjct: 10  KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           + ++ KRF +   ++++Y EK+  RGL A AQAES+++KLL G+AVR+A   VL F M+S
Sbjct: 70  TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           G++G EVV+SGK+RGQRAK+MKF  GLMIHSG P   +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
            A DP+GK GP +P+PD + I +PK++     P S+ K
Sbjct: 190 LAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227

>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
          Length = 246

 Score =  237 bits (605), Expect = 3e-62
 Identities = 115/218 (52%), Positives = 158/218 (72%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DG+ K+ELN F   EL+E GY+G+++R  P R E+I+  T+TQ  LG KG+R+RE+
Sbjct: 10  KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           + ++ KRF +   ++++Y EK+  RGL A AQAES+++KLL G+AVR+A   VL F M+S
Sbjct: 70  TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GA+G EVV+SGK+RGQRAK+MKF  GLMIHSG P   +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
              DP+GK GP +P+PD + I +PK++     P S+ K
Sbjct: 190 LPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227

>sp|P62909|RS3_RAT 40S ribosomal protein S3
 sp|P62908|RS3_MOUSE 40S ribosomal protein S3
          Length = 243

 Score =  237 bits (604), Expect = 3e-62
 Identities = 115/218 (52%), Positives = 158/218 (72%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DG+ K+ELN F   EL+E GY+G+++R  P R E+I+  T+TQ  LG KG+R+RE+
Sbjct: 10  KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           + ++ KRF +   ++++Y EK+  RGL A AQAES+++KLL G+AVR+A   VL F M+S
Sbjct: 70  TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GA+G EVV+SGK+RGQRAK+MKF  GLMIHSG P   +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
              DP+GK GP +P+PD + I +PK++     P S+ K
Sbjct: 190 LPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227

>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
          Length = 246

 Score =  236 bits (601), Expect = 8e-62
 Identities = 114/218 (52%), Positives = 158/218 (72%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DG+ K+ELN F   EL+E GY+G+++R  P + E+I+  T+TQ  LG KG+R+RE+
Sbjct: 10  KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIREL 69

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           + ++ KRF +   ++++Y EK+  RGL A AQAES+++KLL G+AVR+A   VL F M+S
Sbjct: 70  TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GA+G EVV+SGK+RGQRAK+MKF  GLMIHSG P   +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
              DP+GK GP +P+PD + I +PK++     P S+ K
Sbjct: 190 LPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227

>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
          Length = 247

 Score =  236 bits (601), Expect = 8e-62
 Identities = 110/218 (50%), Positives = 161/218 (73%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K +  G+ K+ELN F   EL+E GY+G+++R  P R EVI+  T+TQ  LG +G+R++E+
Sbjct: 12  KAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKEL 71

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           ++++ KRF +E  ++++Y EK++NRGL A AQ ES+++KL+ G+AVR+A   VL F M+S
Sbjct: 72  TSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMES 131

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GAQG EV++SGK+RGQRAKAMKF  GLMIHSG P  +++++AVR V+LRQGV+GIKV IM
Sbjct: 132 GAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIM 191

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
              DP G+ GP   +PD + I +P+E+     P+S +K
Sbjct: 192 LPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHK 229

>sp|P48153|RS3_MANSE 40S ribosomal protein S3
          Length = 243

 Score =  235 bits (600), Expect = 1e-61
 Identities = 114/216 (52%), Positives = 156/216 (72%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DGV K+ELN F   EL+E GY+G+++R  P R E+I+  T+TQ  LG KG+R+RE+
Sbjct: 11  KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIREL 70

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           ++++ KRFN   +++++Y EK+  RGL A AQAES+++KL+ G+AVR+A   VL F M+S
Sbjct: 71  TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 130

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GA+G EVV+SGK+RGQRAK+MKF  GLMIHSG P  ++V  A R V LRQGVLGIKV IM
Sbjct: 131 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 190

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSD 770
              D  GK GP +P PD I++ +PK++     P SD
Sbjct: 191 LPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSD 226

>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
          Length = 249

 Score =  222 bits (565), Expect = 1e-57
 Identities = 110/215 (51%), Positives = 154/215 (71%)
 Frame = +3

Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
           K + DGV  +ELN FF  ELSE GY+G ++R  P+R E+I++ T TQ+ LG KG+R+RE+
Sbjct: 12  KFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIREL 71

Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
           + ++ KRF +    +++Y EK+ NRGL A AQ ES+++KLLAG+AVR+AA  VL + M++
Sbjct: 72  TALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEA 131

Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
           GA+G EVVISGK+R  RAK+MKF  G MIHSGQP+ +F++ A R V LRQGVLG+KV IM
Sbjct: 132 GAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIM 191

Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 767
               P  K    + +PD +V+  PKE++ I  PY+
Sbjct: 192 L---PEPKTRQKKSLPDIVVVLDPKEEEPITKPYT 223

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,010,768
Number of Sequences: 369166
Number of extensions: 1768188
Number of successful extensions: 4852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4827
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00926

Planaria EST Database

DrC_00926

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail