Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_F12
(839 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q06559|RS3_DROME 40S ribosomal protein S3 242 1e-63
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 238 1e-62
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 238 2e-62
sp|P79891|RS3_AMBME 40S ribosomal protein S3 238 2e-62
sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A) 237 3e-62
sp|P62909|RS3_RAT 40S ribosomal protein S3 >gi|51703309|sp|... 237 3e-62
sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B) 236 8e-62
sp|P48152|RS3_CAEEL 40S ribosomal protein S3 236 8e-62
sp|P48153|RS3_MANSE 40S ribosomal protein S3 235 1e-61
sp|O60128|RS3_SCHPO 40S ribosomal protein S3 222 1e-57
>sp|Q06559|RS3_DROME 40S ribosomal protein S3
Length = 246
Score = 242 bits (617), Expect = 1e-63
Identities = 114/218 (52%), Positives = 160/218 (73%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DG+ K+ELN F EL+E GY+G+++R P+R E+I+ TKTQ+ LG KG+R+RE+
Sbjct: 12 KFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIREL 71
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
+ ++ KRFN+E +++Y EK+ RGL A AQAES+++KL G+AVR+A VL + M+S
Sbjct: 72 TAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMES 131
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GA+G EVV+SGK+RGQRAK+MKF GLMIHSG P ++VE A R V LRQGVLGIKV +M
Sbjct: 132 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVM 191
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
DP K GP +P+PD + + +PKE+K + P ++ K
Sbjct: 192 LPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
Length = 243
Score = 238 bits (608), Expect = 1e-62
Identities = 116/218 (53%), Positives = 158/218 (72%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DG+ K+ELN F EL+E GY+G+++R P R E+I+ T+TQ LG KG+R+RE+
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
+ ++ KRF + ++++Y EK+ RGL A AQAES+++KLL G+AVR+A VL F M+S
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GA+G EVV+SGK+RGQRAK+MKF GLMIHSG P +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
DPTGK GP +P+PD + I +PK++ P S+ K
Sbjct: 190 LPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 238 bits (607), Expect = 2e-62
Identities = 116/218 (53%), Positives = 158/218 (72%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DG+ K+ELN F EL+E GY+G+++R P R E+I+ T+TQ LG KG+R+RE+
Sbjct: 10 KFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
+ ++ KRF + ++++Y EK+ RGL A AQAES+++KLL G+AVR+A VL F M+S
Sbjct: 70 TAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GA+G EVV+SGK+RGQRAK+MKF GLMIHSG P +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
DP+GK GP +P+PD + I +PKE+ P S+ K
Sbjct: 190 LPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSEQK 227
>sp|P79891|RS3_AMBME 40S ribosomal protein S3
Length = 253
Score = 238 bits (606), Expect = 2e-62
Identities = 115/218 (52%), Positives = 159/218 (72%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DG+ K+ELN F EL+E GY+G+++R P R E+I+ T+TQ LG KG+R+RE+
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
+ ++ KRF + ++++Y EK+ RGL A AQAES+++KLL G+AVR+A VL F M+S
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
G++G EVV+SGK+RGQRAK+MKF GLMIHSG P +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
A DP+GK GP +P+PD + I +PK++ P S+ K
Sbjct: 190 LAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
Length = 246
Score = 237 bits (605), Expect = 3e-62
Identities = 115/218 (52%), Positives = 158/218 (72%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DG+ K+ELN F EL+E GY+G+++R P R E+I+ T+TQ LG KG+R+RE+
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
+ ++ KRF + ++++Y EK+ RGL A AQAES+++KLL G+AVR+A VL F M+S
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GA+G EVV+SGK+RGQRAK+MKF GLMIHSG P +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
DP+GK GP +P+PD + I +PK++ P S+ K
Sbjct: 190 LPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|P62909|RS3_RAT 40S ribosomal protein S3
sp|P62908|RS3_MOUSE 40S ribosomal protein S3
Length = 243
Score = 237 bits (604), Expect = 3e-62
Identities = 115/218 (52%), Positives = 158/218 (72%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DG+ K+ELN F EL+E GY+G+++R P R E+I+ T+TQ LG KG+R+RE+
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
+ ++ KRF + ++++Y EK+ RGL A AQAES+++KLL G+AVR+A VL F M+S
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GA+G EVV+SGK+RGQRAK+MKF GLMIHSG P +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
DP+GK GP +P+PD + I +PK++ P S+ K
Sbjct: 190 LPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
Length = 246
Score = 236 bits (601), Expect = 8e-62
Identities = 114/218 (52%), Positives = 158/218 (72%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DG+ K+ELN F EL+E GY+G+++R P + E+I+ T+TQ LG KG+R+RE+
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIREL 69
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
+ ++ KRF + ++++Y EK+ RGL A AQAES+++KLL G+AVR+A VL F M+S
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GA+G EVV+SGK+RGQRAK+MKF GLMIHSG P +V+ AVR V LRQGVLGIKV IM
Sbjct: 130 GAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
DP+GK GP +P+PD + I +PK++ P S+ K
Sbjct: 190 LPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
Length = 247
Score = 236 bits (601), Expect = 8e-62
Identities = 110/218 (50%), Positives = 161/218 (73%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + G+ K+ELN F EL+E GY+G+++R P R EVI+ T+TQ LG +G+R++E+
Sbjct: 12 KAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKEL 71
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
++++ KRF +E ++++Y EK++NRGL A AQ ES+++KL+ G+AVR+A VL F M+S
Sbjct: 72 TSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMES 131
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GAQG EV++SGK+RGQRAKAMKF GLMIHSG P +++++AVR V+LRQGV+GIKV IM
Sbjct: 132 GAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIM 191
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDNK 776
DP G+ GP +PD + I +P+E+ P+S +K
Sbjct: 192 LPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHK 229
>sp|P48153|RS3_MANSE 40S ribosomal protein S3
Length = 243
Score = 235 bits (600), Expect = 1e-61
Identities = 114/216 (52%), Positives = 156/216 (72%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DGV K+ELN F EL+E GY+G+++R P R E+I+ T+TQ LG KG+R+RE+
Sbjct: 11 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIREL 70
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
++++ KRFN +++++Y EK+ RGL A AQAES+++KL+ G+AVR+A VL F M+S
Sbjct: 71 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 130
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GA+G EVV+SGK+RGQRAK+MKF GLMIHSG P ++V A R V LRQGVLGIKV IM
Sbjct: 131 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 190
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSD 770
D GK GP +P PD I++ +PK++ P SD
Sbjct: 191 LPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSD 226
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
Length = 249
Score = 222 bits (565), Expect = 1e-57
Identities = 110/215 (51%), Positives = 154/215 (71%)
Frame = +3
Query: 123 KVIHDGVLKSELNTFFKNELSECGYAGIDLRCAPNRYEVILKVTKTQEALGTKGQRVREM 302
K + DGV +ELN FF ELSE GY+G ++R P+R E+I++ T TQ+ LG KG+R+RE+
Sbjct: 12 KFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIREL 71
Query: 303 STILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIKFKLLAGVAVRKAAASVLSFAMQS 482
+ ++ KRF + +++Y EK+ NRGL A AQ ES+++KLLAG+AVR+AA VL + M++
Sbjct: 72 TALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEA 131
Query: 483 GAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKEFVERAVRSVELRQGVLGIKVSIM 662
GA+G EVVISGK+R RAK+MKF G MIHSGQP+ +F++ A R V LRQGVLG+KV IM
Sbjct: 132 GAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIM 191
Query: 663 KAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 767
P K + +PD +V+ PKE++ I PY+
Sbjct: 192 L---PEPKTRQKKSLPDIVVVLDPKEEEPITKPYT 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,630,979
Number of Sequences: 369166
Number of extensions: 1762647
Number of successful extensions: 4861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4836
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)