Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_L21
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q06559|RS3_DROME 40S ribosomal protein S3 205 7e-53
sp|P48152|RS3_CAEEL 40S ribosomal protein S3 202 4e-52
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 202 6e-52
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 201 9e-52
sp|P79891|RS3_AMBME 40S ribosomal protein S3 201 9e-52
sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A) 201 1e-51
sp|P62909|RS3_RAT 40S ribosomal protein S3 >gi|51703309|sp|... 201 2e-51
sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B) 200 3e-51
sp|P48153|RS3_MANSE 40S ribosomal protein S3 199 6e-51
sp|O60128|RS3_SCHPO 40S ribosomal protein S3 186 3e-47
>sp|Q06559|RS3_DROME 40S ribosomal protein S3
Length = 246
Score = 205 bits (522), Expect = 7e-53
Identities = 98/184 (53%), Positives = 136/184 (73%)
Frame = +1
Query: 1 NRYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAE 180
+R E+I+ TKTQ+ LG KG+R+RE++ ++ KRFN+E +++Y EK+ RGL A AQAE
Sbjct: 46 SRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAE 105
Query: 181 SIKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQP 360
S+++KL G+AVR+A VL + M+SGA+G EVV+SGK+RGQRAK+MKF GLMIHSG P
Sbjct: 106 SLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 165
Query: 361 SKEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPY 540
++VE A R V LRQGVLGIKV +M DP K GP +P+PD + + +PKE+K + P
Sbjct: 166 CNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPE 225
Query: 541 SDNK 552
++ K
Sbjct: 226 TEYK 229
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
Length = 247
Score = 202 bits (515), Expect = 4e-52
Identities = 95/183 (51%), Positives = 138/183 (75%)
Frame = +1
Query: 4 RYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAES 183
R EVI+ T+TQ LG +G+R++E+++++ KRF +E ++++Y EK++NRGL A AQ ES
Sbjct: 47 RAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCES 106
Query: 184 IKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPS 363
+++KL+ G+AVR+A VL F M+SGAQG EV++SGK+RGQRAKAMKF GLMIHSG P
Sbjct: 107 LRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPV 166
Query: 364 KEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 543
+++++AVR V+LRQGV+GIKV IM DP G+ GP +PD + I +P+E+ P+S
Sbjct: 167 NDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHS 226
Query: 544 DNK 552
+K
Sbjct: 227 QHK 229
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
Length = 243
Score = 202 bits (514), Expect = 6e-52
Identities = 100/183 (54%), Positives = 134/183 (73%)
Frame = +1
Query: 4 RYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAES 183
R E+I+ T+TQ LG KG+R+RE++ ++ KRF + ++++Y EK+ RGL A AQAES
Sbjct: 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAES 104
Query: 184 IKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPS 363
+++KLL G+AVR+A VL F M+SGA+G EVV+SGK+RGQRAK+MKF GLMIHSG P
Sbjct: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV 164
Query: 364 KEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 543
+V+ AVR V LRQGVLGIKV IM DPTGK GP +P+PD + I +PK++ P S
Sbjct: 165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPIS 224
Query: 544 DNK 552
+ K
Sbjct: 225 EQK 227
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 201 bits (512), Expect = 9e-52
Identities = 100/183 (54%), Positives = 134/183 (73%)
Frame = +1
Query: 4 RYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAES 183
R E+I+ T+TQ LG KG+R+RE++ ++ KRF + ++++Y EK+ RGL A AQAES
Sbjct: 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAES 104
Query: 184 IKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPS 363
+++KLL G+AVR+A VL F M+SGA+G EVV+SGK+RGQRAK+MKF GLMIHSG P
Sbjct: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV 164
Query: 364 KEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 543
+V+ AVR V LRQGVLGIKV IM DP+GK GP +P+PD + I +PKE+ P S
Sbjct: 165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVS 224
Query: 544 DNK 552
+ K
Sbjct: 225 EQK 227
>sp|P79891|RS3_AMBME 40S ribosomal protein S3
Length = 253
Score = 201 bits (512), Expect = 9e-52
Identities = 99/183 (54%), Positives = 135/183 (73%)
Frame = +1
Query: 4 RYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAES 183
R E+I+ T+TQ LG KG+R+RE++ ++ KRF + ++++Y EK+ RGL A AQAES
Sbjct: 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAES 104
Query: 184 IKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPS 363
+++KLL G+AVR+A VL F M+SG++G EVV+SGK+RGQRAK+MKF GLMIHSG P
Sbjct: 105 LRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV 164
Query: 364 KEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 543
+V+ AVR V LRQGVLGIKV IM A DP+GK GP +P+PD + I +PK++ P S
Sbjct: 165 NYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPIS 224
Query: 544 DNK 552
+ K
Sbjct: 225 EQK 227
>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
Length = 246
Score = 201 bits (511), Expect = 1e-51
Identities = 99/183 (54%), Positives = 134/183 (73%)
Frame = +1
Query: 4 RYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAES 183
R E+I+ T+TQ LG KG+R+RE++ ++ KRF + ++++Y EK+ RGL A AQAES
Sbjct: 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAES 104
Query: 184 IKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPS 363
+++KLL G+AVR+A VL F M+SGA+G EVV+SGK+RGQRAK+MKF GLMIHSG P
Sbjct: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV 164
Query: 364 KEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 543
+V+ AVR V LRQGVLGIKV IM DP+GK GP +P+PD + I +PK++ P S
Sbjct: 165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPIS 224
Query: 544 DNK 552
+ K
Sbjct: 225 EQK 227
>sp|P62909|RS3_RAT 40S ribosomal protein S3
sp|P62908|RS3_MOUSE 40S ribosomal protein S3
Length = 243
Score = 201 bits (510), Expect = 2e-51
Identities = 99/183 (54%), Positives = 134/183 (73%)
Frame = +1
Query: 4 RYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAES 183
R E+I+ T+TQ LG KG+R+RE++ ++ KRF + ++++Y EK+ RGL A AQAES
Sbjct: 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAES 104
Query: 184 IKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPS 363
+++KLL G+AVR+A VL F M+SGA+G EVV+SGK+RGQRAK+MKF GLMIHSG P
Sbjct: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV 164
Query: 364 KEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 543
+V+ AVR V LRQGVLGIKV IM DP+GK GP +P+PD + I +PK++ P S
Sbjct: 165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPIS 224
Query: 544 DNK 552
+ K
Sbjct: 225 EQK 227
>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
Length = 246
Score = 200 bits (508), Expect = 3e-51
Identities = 98/181 (54%), Positives = 133/181 (73%)
Frame = +1
Query: 10 EVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAESIK 189
E+I+ T+TQ LG KG+R+RE++ ++ KRF + ++++Y EK+ RGL A AQAES++
Sbjct: 47 EIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLR 106
Query: 190 FKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPSKE 369
+KLL G+AVR+A VL F M+SGA+G EVV+SGK+RGQRAK+MKF GLMIHSG P
Sbjct: 107 YKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNY 166
Query: 370 FVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYSDN 549
+V+ AVR V LRQGVLGIKV IM DP+GK GP +P+PD + I +PK++ P S+
Sbjct: 167 YVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQ 226
Query: 550 K 552
K
Sbjct: 227 K 227
>sp|P48153|RS3_MANSE 40S ribosomal protein S3
Length = 243
Score = 199 bits (505), Expect = 6e-51
Identities = 97/181 (53%), Positives = 132/181 (72%)
Frame = +1
Query: 4 RYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAES 183
R E+I+ T+TQ LG KG+R+RE+++++ KRFN +++++Y EK+ RGL A AQAES
Sbjct: 46 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 105
Query: 184 IKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQPS 363
+++KL+ G+AVR+A VL F M+SGA+G EVV+SGK+RGQRAK+MKF GLMIHSG P
Sbjct: 106 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPC 165
Query: 364 KEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPYS 543
++V A R V LRQGVLGIKV IM D GK GP +P PD I++ +PK++ P S
Sbjct: 166 NDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTS 225
Query: 544 D 546
D
Sbjct: 226 D 226
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
Length = 249
Score = 186 bits (473), Expect = 3e-47
Identities = 92/181 (50%), Positives = 131/181 (72%)
Frame = +1
Query: 1 NRYEVILKVTKTQEALGTKGQRVREMSTILCKRFNWEPKNLDIYIEKITNRGLSASAQAE 180
+R E+I++ T TQ+ LG KG+R+RE++ ++ KRF + +++Y EK+ NRGL A AQ E
Sbjct: 46 SRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCE 105
Query: 181 SIKFKLLAGVAVRKAAASVLSFAMQSGAQGAEVVISGKIRGQRAKAMKFPVGLMIHSGQP 360
S+++KLLAG+AVR+AA VL + M++GA+G EVVISGK+R RAK+MKF G MIHSGQP
Sbjct: 106 SLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQP 165
Query: 361 SKEFVERAVRSVELRQGVLGIKVSIMKAQDPTGKEGPSRPIPDQIVINQPKEDKTIDAPY 540
+ +F++ A R V LRQGVLG+KV IM P K + +PD +V+ PKE++ I PY
Sbjct: 166 AVDFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIVVVLDPKEEEPITKPY 222
Query: 541 S 543
+
Sbjct: 223 T 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,655,568
Number of Sequences: 369166
Number of extensions: 1236900
Number of successful extensions: 3895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3880
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)