Planaria EST Database

DrC_00923

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00923
         (304 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07954|LRP1_HUMAN  Low-density lipoprotein receptor-relat...    36   0.032
sp|P56677|ST14_MOUSE  Suppressor of tumorigenicity 14 (Epithin)    34   0.12 
sp|Q00996|CD59_SHV21  Surface glycoprotein CD59 homolog prec...    33   0.16 
sp|P23502|SL17_ENTHI  170 kDa surface lectin precursor             32   0.35 
sp|Q9Y5Y6|ST14_HUMAN  Suppressor of tumorigenicity 14 (Matri...    32   0.46 
sp|Q9NZR2|LRP1B_HUMAN  Low-density lipoprotein receptor-rela...    31   0.78 
sp|O75094|SLIT3_HUMAN  Slit homolog 3 protein precursor (Sli...    30   2.3  
sp|Q8NEZ4|MLL3_HUMAN  Myeloid/lymphoid or mixed-lineage leuk...    30   2.3  
sp|Q8BRH4|MLL3_MOUSE  Myeloid/lymphoid or mixed-lineage leuk...    30   2.3  
sp|P83107|BOP1_BOVIN  BOP-1 protein precursor                      30   2.3  

>sp|Q07954|LRP1_HUMAN Low-density lipoprotein receptor-related protein 1 precursor (LRP)
            (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E
            receptor) (APOER) (CD91)
          Length = 4544

 Score = 35.8 bits (81), Expect = 0.032
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = +3

Query: 51   ALKCYECDHCEGKAGSPSKDSCDYCLEEAKKDGINRRCGKGGCLSIGNLKCCKNKDLCND 230
            +L C    HC+ K    S +   YC     K    R+C  G C+S  N+  C   D C D
Sbjct: 2541 SLTCDGVPHCKDK----SDEKPSYCNSRRCKKTF-RQCSNGRCVS--NMLWCNGADDCGD 2593

Query: 231  GK*NLDCN 254
            G   + CN
Sbjct: 2594 GSDEIPCN 2601

>sp|P56677|ST14_MOUSE Suppressor of tumorigenicity 14 (Epithin)
          Length = 855

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = +3

Query: 105 KDSCDYCLEEAKKDGIN--------RRCGKGGCLSIGNLKCCKNKDLCNDGK*NLDCN 254
           KD+C    +EA  D +N         RC  G CLS GN +C    D C+DG    +C+
Sbjct: 547 KDNCGDGSDEASCDSVNVVSCTKYTYRCQNGLCLSKGNPECDGKTD-CSDGSDEKNCD 603

>sp|Q00996|CD59_SHV21 Surface glycoprotein CD59 homolog precursor
          Length = 121

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
 Frame = +3

Query: 3   LLFVVSVVLTIISEYEALKCYECDH--CEGKAGSPSKDSCDYCLEEAKKDGINRRCGK-- 170
           +LF + +         +L+CY C H   +    +    + D CL      G+  RC K  
Sbjct: 3   ILFTLVLTFVFCKPIHSLQCYNCSHSTMQCTTSTSCTSNLDSCLIAKAGSGVYYRCWKFD 62

Query: 171 -------GGCLSIGNLK--CCKNKDLCNDGK 236
                     LS   LK  CCK K+LCN  K
Sbjct: 63  DCSFKRISNQLSETQLKYHCCK-KNLCNVNK 92

>sp|P23502|SL17_ENTHI 170 kDa surface lectin precursor
          Length = 1285

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 16/82 (19%)
 Frame = +3

Query: 66   ECDHCEGKAGSPSKDSCDYCLEEAKKDGINRRCGKGGCLSIGNLKC----CKNKDL---- 221
            EC  C         +  D C EE K  G+  +C    C+   N  C    CK +++    
Sbjct: 914  ECKTCSLTETKEKVEEIDLCAEETKNGGVPFKCKNNNCIIDPNFDCQPIECKIQEIVITE 973

Query: 222  --------CNDGK*NLDCNFNN 263
                    C DG     C+ NN
Sbjct: 974  KDGIKTTTCKDGT-KTTCDTNN 994

>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 (Matriptase) (Membrane-type serine
           protease 1) (MT-SP1) (Prostamin) (Serine protease
           TADG-15) (Tumor associated differentially-expressed
           gene-15 protein)
          Length = 855

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +3

Query: 105 KDSCDYCLEEAKKDGIN--------RRCGKGGCLSIGNLKCCKNKDLCNDGK*NLDCN 254
           KD C    +EA    +N         RC  G CLS GN + C  K+ C+DG    DC+
Sbjct: 547 KDDCGDGSDEASCPKVNVVTCTKHTYRCLNGLCLSKGNPE-CDGKEDCSDGSDEKDCD 603

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B precursor
            (Low-density lipoprotein receptor-related protein-deleted
            in tumor) (LRP-DIT)
          Length = 4599

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 162  CGKGGCLSIGNLKCCKNKDLCNDGK*NLDCNFN 260
            C  G C+  G L  C NKD C DG    +C+ N
Sbjct: 2898 CKNGRCIPSGGL--CDNKDDCGDGSDERNCHIN 2928

>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein precursor (Slit-3) (Multiple epidermal growth
            factor-like domains 5)
          Length = 1523

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
 Frame = +3

Query: 60   CYECDHCE-GKAGSPSKDS--CD--------YCLEEAKKDGINRRCGKGGCLSIGNLKCC 206
            C  C  C+ G   S  KDS  C+         C +EA+   +  RC  G C++ G    C
Sbjct: 1332 CKSCTVCKHGLCRSVEKDSVVCECRPGWTGPLCDQEARDPCLGHRCHHGKCVATGTSYMC 1391

Query: 207  K-----NKDLCND 230
            K       DLC++
Sbjct: 1392 KCAEGYGGDLCDN 1404

>sp|Q8NEZ4|MLL3_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (Homologous to ALR protein)
          Length = 4911

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
 Frame = +3

Query: 9    FVVSVVLTIISEYEALKCYECDHCE--GKAGSPSK----DSCD-----YCLE 131
            + VS+ +T +   +  +C EC  CE  GKA  P +    D CD     YCL+
Sbjct: 987  YCVSIKITKVVLSKGWRCLECTVCEACGKATDPGRLLLCDDCDISYHTYCLD 1038

>sp|Q8BRH4|MLL3_MOUSE Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3)
          Length = 4903

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
 Frame = +3

Query: 9    FVVSVVLTIISEYEALKCYECDHCE--GKAGSPSK----DSCD-----YCLE 131
            + VS+ +T +   +  +C EC  CE  GKA  P +    D CD     YCL+
Sbjct: 980  YCVSIKITKVVLSKGWRCLECTVCEACGKATDPGRLLLCDDCDISYHTYCLD 1031

>sp|P83107|BOP1_BOVIN BOP-1 protein precursor
          Length = 100

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
 Frame = +3

Query: 3   LLFVVSVVLTIISEYEALKCYECDHCEGKAGSPSKDSCDYCLEEAKKDGINRRCGKGGCL 182
           LL ++ V+ +++   +AL+C++C+     A    +     C  +  +    RR  + G L
Sbjct: 6   LLLLLVVLSSLLGLPQALECFQCNRV--NASGVCETGGSTCQTQGSQQCFLRRIFENGTL 63

Query: 183 SIGN--------------------LKCCKNKDLCN 227
           S G+                     KCC +  LCN
Sbjct: 64  SYGHQGCSQLCIPMKLFNPSVIVEYKCCHDSPLCN 98

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,209,815
Number of Sequences: 369166
Number of extensions: 458855
Number of successful extensions: 1414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00923

  1. Dr_sW_023_E12
  2. Dr_sW_006_C23